Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

27321675 .. 27324569

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTTACATTCGTGGTCTGGGACACCAAATTATTCCAGGTGGAGGGATGGTATTGCGGATCTGGGGTCGAGTGCTTTGTACAGGTATATAAAATGCCCCTTTCCTTCCACACAAACTCTCCTCCACCATCCCCTACATTATACCCACCTCACTGACTCACTGAGCTCGTCGTCTCCGGCCGCCGCAAACCGCCGGGAAGTAATCTTGGAATTTCATTTTTGTTTCTTCATCGCCGAAATGGCGAACTTAGCAATGACCGGTATACTGGAGAAGATGACGGGCAAGGATAAGGATTTCAGATATATGGCTACTTCTGATTTACTGAATGAATTAAACAAAGATAGTTTTAAAGCTGATTCTGATCTGGAGATAAAGTTGACAAGTATTATTATACAGCAACTTGATGATGTTGCTGGTGATGTATCTGGATTGGCCGTGAAATGTCTCGTTCCATTAGTTAAGAAGGTCAGCGAGCCACGAGTTGTGGAGATGACAAATAAGCTTTGTGAAAAATTGCTAAAGGACAAGGATCATCGTGATATTGCAAGCATAGCTTTGAAGACTATTATTGCTGAAATTTCTACTCAGTCTCTTGCCCAGTCCATTCTTCTATCTATTTTGCCGCAATTGGTTAAAGGAATTACTGATCCAGGAATGAACCATGAGATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

225

Amino Acids

24.97

Weight (kDa)

6.23

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	5 cut(s)	56, 180, 183, 190, 623
AclWI	GGATC	3 cut(s)	66, 537, 641
AcoI	YGGCCR	2 cut(s)	177, 432
AcsI	RAATTY	2 cut(s)	209, 576
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgeI	ACCGGT	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	559
AjnI	CCWGG	2 cut(s)	35, 649
AluBI	AGCT	4 cut(s)	165, 353, 502, 554
AluI	AGCT	4 cut(s)	165, 353, 502, 554
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	3 cut(s)	177, 449, 594
AlwI	GGATC	3 cut(s)	66, 537, 641
AoxI	GGCC	2 cut(s)	177, 432
ApoI	RAATTY	2 cut(s)	209, 576
AsiGI	ACCGGT	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	2 cut(s)	41, 135
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	2 cut(s)	37, 651
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	3 cut(s)	177, 449, 594
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	180, 183, 623
BlsI	GCNGC	3 cut(s)	181, 184, 624
Bme1390I	CCNGG	3 cut(s)	37, 194, 651
BmrFI	CCNGG	3 cut(s)	37, 194, 651
BmrI	ACTGGG	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	2 cut(s)	287, 386
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	6 cut(s)	34, 64, 102, 132, 359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	270, 598
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	37, 651
BseGI	GGATG	2 cut(s)	52, 127
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	152, 599
BseNI	ACTGG	2 cut(s)	270, 598
BseRI	GAGGAG	1 cut(s)	110
BseX3I	CGGCCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	179, 434
BshTI	ACCGGT	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	176, 193, 258
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	3 cut(s)	177, 449, 594
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	179, 434
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	5 cut(s)	58, 361, 529, 646, 666
BspACI	CCGC	5 cut(s)	56, 180, 183, 190, 623
BspANI	GGCC	2 cut(s)	179, 434
BspCNI	CTCAG	2 cut(s)	153, 598
BspPI	GGATC	3 cut(s)	66, 537, 641
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	270, 598
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	5 cut(s)	58, 361, 529, 646, 666
BssNAI	GTATAC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	37, 651
BstAUI	TGTACA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	473, 547
BstDEI	CTNAG	3 cut(s)	161, 247, 585
BstF5I	GGATG	2 cut(s)	52, 127
BstKTI	GATC	5 cut(s)	61, 364, 532, 649, 669
BstMAI	GTCTC	3 cut(s)	177, 449, 594
BstMBI	GATC	5 cut(s)	58, 361, 529, 646, 666
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 248, 551
BstNI	CCWGG	2 cut(s)	37, 651
BstSCI	CCNGG	3 cut(s)	35, 192, 649
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BstZ17I	GTATAC	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	179, 434
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	52, 127
BtsIMutI	CAGTG	2 cut(s)	150, 158
Cac8I	GCNNGC	2 cut(s)	473, 547
Cfr10I	RCCGGY	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	79
CspAI	ACCGGT	1 cut(s)	257
CviAII	CATG	1 cut(s)	662
CviJI	RGCY	8 cut(s)	165, 179, 308, 353, 434, 475, 502, 554
CviKI_1	RGCY	8 cut(s)	165, 179, 308, 353, 434, 475, 502, 554
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	161, 247, 585
DpnI	GATC	5 cut(s)	60, 363, 531, 648, 668
DpnII	GATC	5 cut(s)	58, 361, 529, 646, 666
DraI	TTTAAA	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	177, 432
EagI	CGGCCG	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	35, 649
EcoT38I	GRGCYC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	665
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	180, 183, 623
FokI	GGATG	2 cut(s)	59, 114
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	180, 183, 623
GluI	GCNGC	3 cut(s)	180, 183, 623
GsuI	CTGGAG	2 cut(s)	287, 386
HaeIII	GGCC	2 cut(s)	179, 434
HapII	CCGG	3 cut(s)	176, 193, 258
Hin1II	CATG	1 cut(s)	665
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	2 cut(s)	155, 356
HpaII	CCGG	3 cut(s)	176, 193, 258
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	263, 378
Hpy188I	TCNGA	3 cut(s)	299, 316, 361
Hpy188III	TCNNGA	3 cut(s)	365, 426, 536
Hpy8I	GTNNAC	2 cut(s)	263, 378
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	114, 457
HpyCH4V	TGCA	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 248, 551
HpyF3I	CTNAG	3 cut(s)	161, 247, 585
Hsp92II	CATG	1 cut(s)	665
Kzo9I	GATC	5 cut(s)	58, 361, 529, 646, 666
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	5 cut(s)	60, 363, 531, 648, 668
MboI	GATC	5 cut(s)	58, 361, 529, 646, 666
MboII	GAAGA	4 cut(s)	217, 283, 571, 599
MfeI	CAATTG	1 cut(s)	626
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	7 cut(s)	28, 209, 329, 512, 576, 626, 639
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	36, 131, 158
MseI	TTAA	4 cut(s)	332, 348, 459, 633
MspI	CCGG	3 cut(s)	176, 193, 258
MspR9I	CCNGG	3 cut(s)	37, 194, 651
MunI	CAATTG	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	37, 651
MwoI	GCNNNNNNNGC	3 cut(s)	239, 248, 551
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	5 cut(s)	58, 361, 529, 646, 666
NlaIII	CATG	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	649
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	181, 184, 624
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	35, 649
PspGI	CCWGG	2 cut(s)	35, 649
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	4 cut(s)	332, 348, 459, 633
SatI	GCNGC	3 cut(s)	180, 183, 623
Sau3AI	GATC	5 cut(s)	58, 361, 529, 646, 666
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	37, 194, 651
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	8 cut(s)	41, 86, 150, 167, 355, 468, 504, 556
Sse9I	AATT	7 cut(s)	28, 209, 329, 512, 576, 626, 639
SsiI	CCGC	5 cut(s)	56, 180, 183, 190, 623
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	35, 192, 649
TaqI	TCGA	1 cut(s)	68
TasI	AATT	7 cut(s)	28, 209, 329, 512, 576, 626, 639
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	3 cut(s)	182, 185, 625
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	4 cut(s)	332, 348, 459, 633
Tru9I	TTAA	4 cut(s)	332, 348, 459, 633
TscAI	CASTG	2 cut(s)	157, 165
TspDTI	ATGAA	4 cut(s)	203, 217, 342, 671
TspRI	CASTG	2 cut(s)	157, 165
XapI	RAATTY	2 cut(s)	209, 576
XmiI	GTMKAC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.