Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

29674175 .. 29675274

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37662.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCGAAGCATTATTGATAATGTGTTCGAGCAATTCCGTGCACTGGACAACACCTTTATTCCTAATCTCAATTTTGTGAGTACTGATTGCGATGGCGTAGATTCTGTGCTTGTTGCAAAATTGAATGGGAGTGATGTGAATTTCGAAAATGGAGAGGATAAGAGTTCTGACAGGAAGGCTAAGGTGTATAGTGGAGATGTGAAAGAGCTTAGTGAGCTTGACGGTGTTAGTGTTAAGCAAGATGATCTGCAAGGACCAAATTCGGGTGAGAATGGGAGAGAATGCCATGCACTCCACCTGTTTGATGAAATGTCACAGTCAGATGAGTTGTGTAATTCAGGAAATAACACTGTTGGATACATGGGCATTCGAGACAAAGGTGGGGGTCTAGCTTCTCATTGTACATTTGTCGAGTACTTTCAATTGCCAGAGAAGAAAATAGCTACTATTCAATTGGACTGCAAGCCTTATGTGGTTCATAACGACTTGGGTTCAAAAGAAAAAAGCGCTAGTAGTGTTGTTGCGCATAGTGAAGCTTTCACTGGTGTCCATGGAATCCTAGAGTTAGGAGATTGTAGATTGACTTATTTTGGTAAAGGTATCCTAAAGGCTGAGGGGAATGTGAATGGCATTATTGGACCTGCCTTGATTGATGATGATCCAAGGGAACAAATCCAAGTTGACGATTATATGGTTCAACAGCTTGAGAGAATTAGAAATGAATGGGGTTGTGTGAGACCCCGTAAATATTTTAAGGAGCTAAAGTTGAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

259

Amino Acids

28.58

Weight (kDa)

4.86

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_N	PF03952	162 - 233	1.2e-07	Enolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	525
Acc36I	ACCTGC	1 cut(s)	649
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	139, 259
AfaI	GTAC	3 cut(s)	82, 403, 416
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	43, 263
AgsI	TTSAA	6 cut(s)	124, 422, 452, 495, 698, 769
AluBI	AGCT	7 cut(s)	208, 217, 392, 443, 536, 703, 760
AluI	AGCT	7 cut(s)	208, 217, 392, 443, 536, 703, 760
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	366, 730
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	508
ApaLI	GTGCAC	1 cut(s)	39
ApoI	RAATTY	2 cut(s)	139, 259
AspLEI	GCGC	2 cut(s)	509, 526
AspS9I	GGNCC	2 cut(s)	254, 638
AsuHPI	GGTGA	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	254, 638
BaeGI	GKGCMC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	612
BccI	CCATC	1 cut(s)	86
BciVI	GTATCC	2 cut(s)	350, 611
BcoDI	GTCTC	2 cut(s)	366, 730
BfaI	CTAG	3 cut(s)	389, 510, 560
BfoI	RGCGCY	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	649
BfuI	GTATCC	2 cut(s)	350, 611
BmcAI	AGTACT	2 cut(s)	82, 416
Bme18I	GGWCC	2 cut(s)	254, 638
BmgT120I	GGNCC	2 cut(s)	254, 638
Bpu10I	CCTNAGC	2 cut(s)	180, 612
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	550, 662
BsaXI	ACNNNNNCTCC	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 263
Bse1I	ACTGG	2 cut(s)	48, 547
Bse8I	GATNNNNATC	1 cut(s)	657
BseDI	CCNNGG	2 cut(s)	550, 662
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	43, 263
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	2 cut(s)	48, 547
BseSI	GKGCMC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	43, 263
BsmAI	GTCTC	2 cut(s)	366, 730
BsmI	GAATGC	2 cut(s)	287, 366
Bso31I	GGTCTC	1 cut(s)	730
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	244, 658
Bsp19I	CCATGG	1 cut(s)	550
BspCNI	CTCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	1 cut(s)	653
BspT104I	TTCGAA	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	730
BsrGI	TGTACA	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	48, 547
BssECI	CCNNGG	2 cut(s)	550, 662
BssMI	GATC	2 cut(s)	244, 658
BssT1I	CCWWGG	2 cut(s)	550, 662
Bst4CI	ACNGT	3 cut(s)	224, 318, 352
BstAUI	TGTACA	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	3 cut(s)	180, 209, 612
BstDSI	CCRYGG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	2 cut(s)	509, 526
BstKTI	GATC	2 cut(s)	247, 661
BstMAI	GTCTC	2 cut(s)	366, 730
BstMBI	GATC	2 cut(s)	244, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	43
BsuI	GTATCC	2 cut(s)	350, 611
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	41, 348, 540
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	464
CfoI	GCGC	2 cut(s)	509, 526
Cfr13I	GGNCC	2 cut(s)	254, 638
Csp6I	GTAC	3 cut(s)	81, 402, 415
CviAII	CATG	3 cut(s)	287, 361, 551
CviQI	GTAC	3 cut(s)	81, 402, 415
DdeI	CTNAG	3 cut(s)	180, 209, 612
DpnI	GATC	2 cut(s)	246, 660
DpnII	GATC	2 cut(s)	244, 658
Eco130I	CCWWGG	2 cut(s)	550, 662
Eco31I	GGTCTC	1 cut(s)	730
Eco47I	GGWCC	2 cut(s)	254, 638
Eco47III	AGCGCT	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	550, 662
ErhI	CCWWGG	2 cut(s)	550, 662
FaeI	CATG	3 cut(s)	290, 364, 554
FaiI	YATR	9 cut(s)	189, 288, 362, 471, 480, 528, 552, 690, 692
FatI	CATG	3 cut(s)	286, 360, 550
FspBI	CTAG	3 cut(s)	389, 510, 560
FspI	TGCGCA	1 cut(s)	525
GlaI	GCGC	2 cut(s)	508, 525
HaeII	RGCGCY	1 cut(s)	510
HhaI	GCGC	2 cut(s)	509, 526
Hin1II	CATG	3 cut(s)	290, 364, 554
Hin6I	GCGC	2 cut(s)	507, 524
HinP1I	GCGC	2 cut(s)	507, 524
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	2 cut(s)	101, 555
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	41, 682
Hpy188I	TCNGA	2 cut(s)	169, 322
Hpy188III	TCNNGA	2 cut(s)	339, 371
Hpy8I	GTNNAC	2 cut(s)	41, 682
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	3 cut(s)	224, 318, 352
HpyCH4V	TGCA	5 cut(s)	41, 116, 250, 290, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	3 cut(s)	180, 209, 612
Hsp92II	CATG	3 cut(s)	290, 364, 554
HspAI	GCGC	2 cut(s)	507, 524
Kzo9I	GATC	2 cut(s)	244, 658
LmnI	GCTCC	1 cut(s)	757
LpnPI	CCDG	7 cut(s)	29, 157, 311, 324, 441, 528, 654
MaeI	CTAG	3 cut(s)	389, 510, 560
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	2 cut(s)	246, 660
MboI	GATC	2 cut(s)	244, 658
MboII	GAAGA	1 cut(s)	445
MfeI	CAATTG	2 cut(s)	422, 452
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	9 cut(s)	32, 70, 119, 139, 259, 334, 422, 452, 711
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	2 cut(s)	148, 607
MseI	TTAA	2 cut(s)	234, 753
MunI	CAATTG	2 cut(s)	422, 452
Mva1269I	GAATGC	2 cut(s)	287, 366
MwoI	GCNNNNNNNGC	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	2 cut(s)	244, 658
NlaIII	CATG	3 cut(s)	290, 364, 554
NmuCI	GTSAC	1 cut(s)	312
NsbI	TGCGCA	1 cut(s)	525
NspV	TTCGAA	1 cut(s)	144
PctI	GAATGC	2 cut(s)	287, 366
PfeI	GAWTC	2 cut(s)	101, 555
PspPI	GGNCC	2 cut(s)	254, 638
RsaI	GTAC	3 cut(s)	82, 403, 416
RsaNI	GTAC	3 cut(s)	81, 402, 415
SaqAI	TTAA	2 cut(s)	234, 753
Sau3AI	GATC	2 cut(s)	244, 658
Sau96I	GGNCC	2 cut(s)	254, 638
ScaI	AGTACT	2 cut(s)	82, 416
SduI	GDGCHC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	144
SinI	GGWCC	2 cut(s)	254, 638
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	9 cut(s)	32, 70, 119, 139, 259, 334, 422, 452, 711
SspI	AATATT	1 cut(s)	749
SspMI	CTAG	3 cut(s)	389, 510, 560
StyI	CCWWGG	2 cut(s)	550, 662
TaaI	ACNGT	3 cut(s)	224, 318, 352
TaqI	TCGA	4 cut(s)	27, 144, 370, 411
TasI	AATT	9 cut(s)	32, 70, 119, 139, 259, 334, 422, 452, 711
TatI	WGTACW	3 cut(s)	80, 401, 414
TfiI	GAWTC	2 cut(s)	101, 555
Tru1I	TTAA	2 cut(s)	234, 753
Tru9I	TTAA	2 cut(s)	234, 753
TscAI	CASTG	3 cut(s)	48, 355, 547
TseFI	GTSAC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	321, 467, 735
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	3 cut(s)	48, 355, 547
VneI	GTGCAC	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	254, 638
XapI	RAATTY	2 cut(s)	139, 259
XspI	CTAG	3 cut(s)	389, 510, 560
ZrmI	AGTACT	2 cut(s)	82, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.