Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

20471853 .. 20472483

Gene Structure 631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27352.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTTGTGGGTGCTGTTGATTCTGTGTTTGTTGGGTCAATTCCTGTTGGTGTTAGTGTTAGGCATGATAATCAGGGACCAAATTCGGGTGAGAAGGAAGGACTGTTGCAGCTCTTACGAGTATTCGAGATAAAAGGTGGGGGACTTGCTCACCAACCTTTAGAATATGCACTTGGGGTGAATCGTGCAAAAGAGAATGAAGGTGTTGACATGAAGGCTAATCAACTTGAGGATGGCAATGCTATATCGGAGATAGGTTTTAGCTCTCAACTTATTCAAAGCAATGAATCACTTAAGATTGTTTCCAGGGCAGAGGTTCCAATTGATGGGATTGTAATTACTGGTCAAAGCCATGTGAATGGGAGTATGACCACACATGAGGCAAGGGCCATTTGTGAAAGATTTGGTTACAGGATAATTGGTGGCACCATGAGTGATGGATGCTTACAGGTTAAGGCAATCCGTCTTTTTGAGGTTGATAAAGAAATTGATGAAAATGTGGGATTAAGTCAGCCTCGAGTGAAGGGAGAGATCAAAATGAAAATGATGTTAAACAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

188

Amino Acids

20.23

Weight (kDa)

5.61

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	86, 326
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	112, 264
AluI	AGCT	2 cut(s)	112, 264
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	77, 387
AsuHPI	GGTGA	3 cut(s)	101, 143, 190
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	227, 320, 431
BciT130I	CCWGG	1 cut(s)	307
BfrI	CTTAAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	77, 387
BmiI	GGNNCC	3 cut(s)	78, 318, 427
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 326
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	244, 289
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	238, 446
BseLI	CCNNNNNNNGG	2 cut(s)	86, 326
BseMI	GCAATG	2 cut(s)	244, 289
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	90, 156
BslI	CCNNNNNNNGG	2 cut(s)	86, 326
BsmFI	GGGAC	2 cut(s)	90, 156
BsnI	GGCC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	531
BspANI	GGCC	1 cut(s)	389
BspLI	GGNNCC	3 cut(s)	78, 318, 427
BspT107I	GGYRCC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	244, 289
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	238, 446
BstKTI	GATC	1 cut(s)	534
BstMBI	GATC	1 cut(s)	531
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	238, 446
Cfr13I	GGNCC	2 cut(s)	77, 387
CviAII	CATG	5 cut(s)	65, 211, 353, 377, 430
CviJI	RGCY	6 cut(s)	112, 218, 264, 351, 389, 514
CviKI_1	RGCY	6 cut(s)	112, 218, 264, 351, 389, 514
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	305
FaeI	CATG	5 cut(s)	68, 214, 356, 380, 433
FaiI	YATR	8 cut(s)	66, 168, 212, 245, 354, 368, 378, 431
FaqI	GGGAC	2 cut(s)	90, 156
FatI	CATG	5 cut(s)	64, 210, 352, 376, 429
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	2 cut(s)	245, 453
Fsp4HI	GCNGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	389
Hin1II	CATG	5 cut(s)	68, 214, 356, 380, 433
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	20, 181, 287
HphI	GGTGA	3 cut(s)	101, 143, 190
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	5 cut(s)	88, 92, 194, 208, 517
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	109, 170, 188
Hsp92II	CATG	5 cut(s)	68, 214, 356, 380, 433
Kzo9I	GATC	1 cut(s)	531
LpnPI	CCDG	8 cut(s)	57, 59, 292, 319, 327, 397, 434, 541
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MfeI	CAATTG	1 cut(s)	321
MluCI	AATT	6 cut(s)	39, 82, 321, 336, 417, 486
MnlI	CCTC	5 cut(s)	223, 307, 373, 466, 525
MseI	TTAA	4 cut(s)	294, 453, 506, 551
MslI	CAYNNNNRTG	1 cut(s)	357
MspCI	CTTAAG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	5 cut(s)	68, 214, 356, 380, 433
NlaIV	GGNNCC	3 cut(s)	78, 318, 427
PaeR7I	CTCGAG	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	20, 181, 287
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	78, 318, 427
PspPI	GGNCC	2 cut(s)	77, 387
PspXI	VCTCGAGB	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	294, 453, 506, 551
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	2 cut(s)	77, 387
ScrFI	CCNGG	1 cut(s)	307
SetI	ASST	9 cut(s)	114, 139, 160, 205, 259, 266, 318, 453, 477
SfaNI	GCATC	1 cut(s)	431
Sfr274I	CTCGAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	3 cut(s)	227, 293, 516
SmoI	CTYRAG	3 cut(s)	227, 293, 516
Sse9I	AATT	6 cut(s)	39, 82, 321, 336, 417, 486
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	126, 517
TasI	AATT	6 cut(s)	39, 82, 321, 336, 417, 486
TfiI	GAWTC	3 cut(s)	20, 181, 287
Tru1I	TTAA	4 cut(s)	294, 453, 506, 551
Tru9I	TTAA	4 cut(s)	294, 453, 506, 551
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	5 cut(s)	213, 227, 300, 507, 554
TspGWI	ACGGA	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.