FvH4_2g20031

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
16852111 .. 16855861
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20031.t1

Sequence Viewer

Length: 1785 bp
ATGAATCTGGGAGCTGGGCAACCGGCGATTCCGACGCTCGGCGTCGAACCTCTTGTGCTCGACGAAGATTTGTTTCTTCTTGCAATGAGCCGTGCACTGGATAAAACTTTACCATCGCTTCAATCCAAGCTGCAAAGTATGATTGAAAATGTGTTCGAGCAATTTCGATTGACAACACCACCACCAGCCTTGTCGCAACCAGTCTACTACCAGCAGCGATCACTAGAGCAATCATCAACTCCAGTTTCTGATCCCAAAACTCAAATTGAGATTGTTCACTCTCATCTTTGGAAGGCTCGAAGCAAGCAAGTCGCTCTCAAGTCGACTGCGGGCACCGGAGGAGTGAAGAAACCGCACAGTTTCAGGCTAGGAGCATCCATGCTCCAAAAGACAGCCAAATACCAGAAGCGCAATTTCCGGAGTTCAGCTGCGTCTCTTCTACTCGAGGATGCCATTTCGGCTCAGTCAAACCTTAACCCTACTTCTGTTTGCCTGGTGAGTGATACTGGCACTAGTATTCCTAATCTCAATTTTGTGAGTACTGACTGCGTTGGCGTAGATTCTGTGCTTGTTGCAAAATTGAATGGGAGTGATGTGAATTTCGGAAATGGAGAGGATGAGACTTTTGACAGGAAGGCTAAGGTGTATAGTGGAGATGTGAAAGAGCTTAGTGAGCTTGATAGTGTTAGTGTTAAGCAAGATGATCTGCAAGGACCAAATTCGGGTGAGAATGGGAGAGAATGCCATGCACTCCACCTGCTTGATGAAATGCCTCAGTCAAAGGGGTTGTGTAGTGTAGGGGGGACTGTTGCAACTCTTACAAGTATTCGAGACAAAGGTGGGGGACTTGCTCACCAACCTGTAGAAGTGGCATTTGGGGCTAGTTATGAAGAAAAGGATGATGGTTTTGACAAATCAGTTGGCAACACATTTCTAGGTGTTGAGGTTTTTACTCTCATGGATGTTGACAATGGATTATTGAATGGTAATTTTGGTGAAGAAAATGTTTGCATGGATAATAGCTATGAGAAAATGCATGTGAATTCTAAAATGGTGCTGGAGTTAATATTGGAAAAGTGGAAATCACAAGTTACAGTGGAAACACAATCTCAAGCTAACATAGTGCAGTGGCTTATTTTCTACTGGCAGCCTTGTCATTGCGAGACAAAAGGGATTGTACTCTTTTGCATGGAAGCATTCGACGAACTTTGTGAAATGTTTCAAAACTCATTGTCTCAGGGAGGTATTTTGGGGCTTGATGTGCATGGGAGAATATTGATGGCTTATGGGAAAGAGCATAGGTTTGTGGAAACCACTCAACTGGTGATGGATATTAATAACTCGTGGCTTATGTTGGACATGGAAGCATATGCTACTCTAATAGGAGCATTTATCTCTGGTCATGATTTTCAATCGGCTTTTGTTGTGGTATTGAGTGACTTGTCCAAGCTCCCTGTTGTGATCTTTAGTGCTTTCAATGATAATGCTGGGAATTTACTTACTGAAGACATAGTTGGGATAGTGAGTGACCATCATAAAGAGGACTGGAGAGTTATACATGCCTGGATGTATGAAAAGGGAATCTATAGTGAGTTCGTTGAGAAGCCAGAAGACAGGAAACTTGAAGCTTTGATATATGCCAATTTGAGAATTGATGATGCAACCTACAAACTGATTGCAGGAAACATTGTATTCTGTATGTGTGCTATGCATTCTTTAACGGGGCAAATAGACTTTGCAGATTCATTGTCAAGTATGTTGGGTGTTTATCATGCAATTGAATGA

Protein Analysis

595

Amino Acids

65.47

Weight (kDa)

4.9

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 765
Acc36I ACCTGC 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 332
AccI GTMKAC 2 cut(s) 204, 323
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 2 cut(s) 329, 353
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 4 cut(s) 598, 718, 1042, 1492
AcuI CTGAAG 1 cut(s) 1524
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 541, 1179
AfiI CCNNNNNNNGG 3 cut(s) 38, 97, 722
AgsI TTSAA 9 cut(s) 122, 146, 583, 982, 1223, 1412, 1477, 1625, 1781
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 2 cut(s) 492, 1562
AjuI GAANNNNNNNTTGG 4 cut(s) 858, 890, 1497, 1529
AluBI AGCT 9 cut(s) 14, 130, 428, 667, 676, 1023, 1115, 1450, 1628
AluI AGCT 9 cut(s) 14, 130, 428, 667, 676, 1023, 1115, 1450, 1628
Alw21I GWGCWC 2 cut(s) 60, 97
Alw26I GTCTC 5 cut(s) 438, 614, 825, 1157, 1239
Alw44I GTGCAC 1 cut(s) 93
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 443
Aor13HI TCCGGA 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 4 cut(s) 130, 214, 428, 1147
ApoI RAATTY 4 cut(s) 598, 718, 1042, 1492
AseI ATTAAT 1 cut(s) 1335
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 713
AsuHPI GGTGA 5 cut(s) 508, 737, 845, 1007, 1336
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 713
BaeGI GKGCMC 2 cut(s) 97, 335
BanI GGYRCC 1 cut(s) 332
BauI CACGAG 1 cut(s) 1342
BbsI GAAGAC 2 cut(s) 1512, 1617
Bbv12I GWGCWC 2 cut(s) 60, 97
BbvI GCAGC 4 cut(s) 117, 226, 415, 1159
BccI CCATC 5 cut(s) 121, 896, 1273, 1321, 1539
BceAI ACGGC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 2 cut(s) 494, 1564
BcoDI GTCTC 5 cut(s) 438, 614, 825, 1157, 1239
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 5 cut(s) 224, 368, 513, 882, 935
BfmI CTRYAG 2 cut(s) 861, 1585
BfuAI ACCTGC 1 cut(s) 765
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 4 cut(s) 131, 215, 429, 1148
BlsI GCNGC 4 cut(s) 132, 216, 430, 1149
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 494, 1564
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 713
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 494, 1564
BmsI GCATC 3 cut(s) 383, 439, 1648
BpiI GAAGAC 2 cut(s) 1512, 1617
BpmI CTGGAG 3 cut(s) 225, 1079, 1567
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 302, 1095
BsaHI GRCGYC 1 cut(s) 42
BsaWI WCCGGW 2 cut(s) 335, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 97, 722
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 7 cut(s) 102, 200, 242, 511, 1148, 1326, 1550
Bse3DI GCAATG 2 cut(s) 90, 1156
BseAI TCCGGA 1 cut(s) 417
BseBI CCWGG 2 cut(s) 494, 1564
BseGI GGATG 6 cut(s) 374, 454, 622, 904, 967, 1572
BseLI CCNNNNNNNGG 3 cut(s) 38, 97, 722
BseMI GCAATG 2 cut(s) 90, 1156
BseMII CTCAG 3 cut(s) 476, 788, 1250
BseNI ACTGG 7 cut(s) 102, 200, 242, 511, 1148, 1326, 1550
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 2 cut(s) 97, 335
BseXI GCAGC 4 cut(s) 117, 226, 415, 1159
BseYI CCCAGC 2 cut(s) 14, 1487
BsgI GTGCAG 1 cut(s) 1145
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 60, 97
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 3 cut(s) 23, 336, 418
BslFI GGGAC 2 cut(s) 817, 858
BslI CCNNNNNNNGG 3 cut(s) 38, 97, 722
BsmAI GTCTC 5 cut(s) 438, 614, 825, 1157, 1239
BsmBI CGTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 817, 858
BsmI GAATGC 3 cut(s) 746, 1196, 1711
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 60, 97, 335
Bsp13I TCCGGA 1 cut(s) 417
Bsp143I GATC 4 cut(s) 218, 250, 703, 1461
BspACI CCGC 2 cut(s) 329, 353
BspCNI CTCAG 3 cut(s) 475, 787, 1249
BspEI TCCGGA 1 cut(s) 417
BspHI TCATGA 1 cut(s) 1402
BspLI GGNNCC 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 765
BspPI GGATC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 90, 1156
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 7 cut(s) 102, 200, 242, 511, 1148, 1326, 1550
BssAI RCCGGY 1 cut(s) 22
BssMI GATC 4 cut(s) 218, 250, 703, 1461
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 1342
Bst2BI CACGAG 1 cut(s) 1342
Bst2UI CCWGG 2 cut(s) 494, 1564
Bst4CI ACNGT 3 cut(s) 359, 808, 1096
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 305, 331
BstDEI CTNAG 5 cut(s) 462, 639, 668, 774, 1236
BstF5I GGATG 6 cut(s) 374, 454, 622, 904, 967, 1572
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 4 cut(s) 221, 253, 706, 1464
BstMAI GTCTC 5 cut(s) 438, 614, 825, 1157, 1239
BstMBI GATC 4 cut(s) 218, 250, 703, 1461
BstMWI GCNNNNNNNGC 4 cut(s) 458, 673, 878, 1261
BstNI CCWGG 2 cut(s) 494, 1564
BstNSI RCATGY 2 cut(s) 1040, 1562
BstSCI CCNGG 2 cut(s) 492, 1562
BstSFI CTRYAG 2 cut(s) 861, 1585
BstSLI GKGCMC 2 cut(s) 97, 335
BstV1I GCAGC 4 cut(s) 117, 226, 415, 1159
BstV2I GAAGAC 2 cut(s) 1512, 1617
BstXI CCANNNNNNTGG 1 cut(s) 1321
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 6 cut(s) 374, 454, 622, 904, 967, 1572
BtsI GCAGTG 1 cut(s) 1133
BtsIMutI CAGTG 3 cut(s) 95, 1101, 1133
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 305, 331
CaiI CAGNNNCTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 1402
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 713
CseI GACGC 3 cut(s) 31, 43, 420
Csp6I GTAC 2 cut(s) 540, 1178
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviQI GTAC 2 cut(s) 540, 1178
DdeI CTNAG 5 cut(s) 462, 639, 668, 774, 1236
DpnI GATC 4 cut(s) 220, 252, 705, 1463
DpnII GATC 4 cut(s) 218, 250, 703, 1461
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 1524
Eco88I CYCGRG 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 492, 1562
EcoT22I ATGCAT 2 cut(s) 1038, 1713
Esp3I CGTCTC 1 cut(s) 438
FaqI GGGAC 2 cut(s) 817, 858
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 1369
FblI GTMKAC 2 cut(s) 204, 323
Fnu4HI GCNGC 4 cut(s) 131, 215, 429, 1148
FokI GGATG 6 cut(s) 361, 461, 629, 911, 974, 1579
Fsp4HI GCNGC 4 cut(s) 131, 215, 429, 1148
FspBI CTAG 5 cut(s) 224, 368, 513, 882, 935
GlaI GCGC 1 cut(s) 410
GluI GCNGC 4 cut(s) 131, 215, 429, 1148
GsaI CCCAGC 2 cut(s) 18, 1491
GsuI CTGGAG 3 cut(s) 225, 1079, 1567
HapII CCGG 3 cut(s) 23, 336, 418
HgaI GACGC 3 cut(s) 31, 43, 420
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 2 cut(s) 324, 967
HindII GTYRAC 2 cut(s) 324, 967
HindIII AAGCTT 1 cut(s) 1626
HinfI GANTC 5 cut(s) 4, 28, 560, 1581, 1742
HpaII CCGG 3 cut(s) 23, 336, 418
HphI GGTGA 5 cut(s) 508, 737, 845, 1007, 1336
Hpy166II GTNNAC 5 cut(s) 95, 205, 277, 324, 967
Hpy188I TCNGA 3 cut(s) 33, 250, 605
Hpy188III TCNNGA 3 cut(s) 418, 830, 1403
Hpy8I GTNNAC 5 cut(s) 95, 205, 277, 324, 967
Hpy99I CGWCG 4 cut(s) 37, 47, 65, 1205
HpyAV CCTTC 2 cut(s) 286, 628
HpyCH4III ACNGT 3 cut(s) 359, 808, 1096
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 673, 878, 1261
HpyF3I CTNAG 5 cut(s) 462, 639, 668, 774, 1236
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 1 cut(s) 409
Kpn2I TCCGGA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 218, 250, 703, 1461
LmnI GCTCC 5 cut(s) 11, 371, 387, 1385, 1455
Lsp1109I GCAGC 4 cut(s) 117, 226, 415, 1159
LweI GCATC 3 cut(s) 383, 439, 1648
MaeI CTAG 5 cut(s) 224, 368, 513, 882, 935
MaeIII GTNAC 3 cut(s) 1090, 1436, 1526
MalI GATC 4 cut(s) 220, 252, 705, 1463
MboI GATC 4 cut(s) 218, 250, 703, 1461
MboII GAAGA 8 cut(s) 68, 77, 358, 428, 902, 1010, 1517, 1622
MfeI CAATTG 1 cut(s) 1776
MhlI GDGCHC 3 cut(s) 60, 97, 335
MmeI TCCRAC 2 cut(s) 56, 1335
MnlI CCTC 8 cut(s) 60, 332, 439, 607, 783, 937, 1235, 1534
Mph1103I ATGCAT 2 cut(s) 1038, 1713
MroI TCCGGA 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 5 cut(s) 474, 693, 1064, 1335, 1718
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 23, 336, 418
MspR9I CCNGG 2 cut(s) 494, 1564
MunI CAATTG 1 cut(s) 1776
Mva1269I GAATGC 3 cut(s) 746, 1196, 1711
MvaI CCWGG 2 cut(s) 494, 1564
MwoI GCNNNNNNNGC 4 cut(s) 458, 673, 878, 1261
NdeI CATATG 1 cut(s) 1369
NdeII GATC 4 cut(s) 218, 250, 703, 1461
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 1436, 1526
NsiI ATGCAT 2 cut(s) 1038, 1713
NspI RCATGY 2 cut(s) 1040, 1562
PaeR7I CTCGAG 1 cut(s) 443
PagI TCATGA 1 cut(s) 1402
PaqCI CACCTGC 1 cut(s) 765
PctI GAATGC 3 cut(s) 746, 1196, 1711
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 5 cut(s) 4, 28, 560, 1581, 1742
PkrI GCNGC 4 cut(s) 132, 216, 430, 1149
PshBI ATTAAT 1 cut(s) 1335
Psp6I CCWGG 2 cut(s) 492, 1562
PspFI CCCAGC 2 cut(s) 14, 1487
PspGI CCWGG 2 cut(s) 492, 1562
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 541, 1179
RsaNI GTAC 2 cut(s) 540, 1178
SalI GTCGAC 1 cut(s) 322
SaqAI TTAA 5 cut(s) 474, 693, 1064, 1335, 1718
SatI GCNGC 4 cut(s) 131, 215, 429, 1148
Sau3AI GATC 4 cut(s) 218, 250, 703, 1461
Sau96I GGNCC 1 cut(s) 713
ScaI AGTACT 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 494, 1564
SduI GDGCHC 3 cut(s) 60, 97, 335
SfaNI GCATC 3 cut(s) 383, 439, 1648
SfcI CTRYAG 2 cut(s) 861, 1585
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 443
SmlI CTYRAG 3 cut(s) 317, 443, 1110
SmoI CTYRAG 3 cut(s) 317, 443, 1110
SpeI ACTAGT 1 cut(s) 512
SsiI CCGC 2 cut(s) 329, 353
SspI AATATT 2 cut(s) 1068, 1275
SspMI CTAG 5 cut(s) 224, 368, 513, 882, 935
StyD4I CCNGG 2 cut(s) 492, 1562
TaaI ACNGT 3 cut(s) 359, 808, 1096
TaqI TCGA 9 cut(s) 45, 60, 156, 166, 298, 323, 444, 829, 1200
TatI WGTACW 2 cut(s) 539, 1177
TfiI GAWTC 5 cut(s) 4, 28, 560, 1581, 1742
Tru1I TTAA 5 cut(s) 474, 693, 1064, 1335, 1718
Tru9I TTAA 5 cut(s) 474, 693, 1064, 1335, 1718
TscAI CASTG 3 cut(s) 102, 1101, 1133
TseFI GTSAC 2 cut(s) 1436, 1526
TseI GCWGC 4 cut(s) 130, 214, 428, 1147
Tsp45I GTSAC 2 cut(s) 1436, 1526
TspDTI ATGAA 5 cut(s) 17, 780, 903, 1587, 1734
TspRI CASTG 3 cut(s) 102, 1101, 1133
VneI GTGCAC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 713
VspI ATTAAT 1 cut(s) 1335
XapI RAATTY 4 cut(s) 598, 718, 1042, 1492
XceI RCATGY 2 cut(s) 1040, 1562
XhoI CTCGAG 1 cut(s) 443
XmiI GTMKAC 2 cut(s) 204, 323
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 5 cut(s) 224, 368, 513, 882, 935
ZrmI AGTACT 1 cut(s) 541
Zsp2I ATGCAT 2 cut(s) 1038, 1713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.