Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

32533644 .. 32535532

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35091.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGCGTATCATCCTTACCAACAAAGCTACCCACATACTCTGCATCATTTCATTCCCACAAACCAGTTTGTTCCACCACATACCGCTCATGAGCCATCACCTCCAATTGCATACCCAAGGCAGGCTGAGCCTGATCTTCATCCTTGTTCAATTCCACTGCAAATTGATTCAGAGGTCCCAATCACTGATTCTAAACACTGAGTTCAATTTCTCAGATGCAAAGGTGAGCGAGTTCCTAGAATCTGTGAGTAGATTGTGGGATGCTTGCATGTCTAAATGTATGAAGGGGATACAGTCGTCTGAAGGTTCATCGCCCTCGTTGCTAGATGATGTTCCTCCGCCGACTCACACTCCCAAAATCCAGAGCTCAGAGCCCAAGATATGCTCCCCAATGCGGCCACAACCCACCTCCAAGCCGTCTCATCTGGGTGACACTCAATCTCTTTCAGTTGCCAATATCTCAATGTCTCGTACCAAACAAGCCTCTAGCAAGTCGATTCCAGCCACTGGAGGAGTGAAGAAGTGCAAGTTTCTGCAACGTAATAAGCTTTTGATGCGCAAGCTCGCATTCAAGACAAATTTGAGGGTCCAGAGCTCAGTTGCGCCTCCTCTCCTTGACGATGTCGTTTCGGCTATATCGAACAACACTCATGCATCCTTTTGTTCAGGACCGAATTTGGGTGAAAATGGGAGAGAATGCGATGCACTCCACCTGCTTGATGAAATGTCCAAGTCAAAGGAGTTGTGTAATGCAGGAAAGATGAGTGTTGGCTATATGGGCATTAGAGACAAAGGTGGGGGTCTCGCAACTCATTGTGCAATTGTCTATGAGTATTTTCAATTGCCAGACAAGAAAACTACTGCTCACTTGGACTACAAGCCTTCTGTGGTTTCTAGAAACTTCGGTTTGAAAGATAAAACGGCTAGAGCTCTTGCGCCAAGTGAAGCTCTCACAGGTGTCCATGGATTCATGGAGTTTGGAAATTGCAAATTGGATTATTTTGGGAAAGGTGTCCTTGCGGTTGCAGGGAATGTGAACGACATAATTGGACTTGCCTTGATTGAGAATGATCCGGTGGAACAAATCCTAGTTGACAATTATATGGTTCAACAGCTTGAGAGATTTAGAAATGAATGGGGTTGGTGCAAACAAGAGCTCGGAGAAAATGCTATATCAGCAGTATCTCTTTATGTTCGTAAAGCTGGTGCCAATCTTGCTGGAAACAAGACCTTGATTCTGCATGTTCCAACTAAATCTGATGGTTCATCTATCACATTGCTTACCAAGGATATATGTAACAATGTGTGGGTGAGTTCTGGTGCACTAAAGCTTGTCCAATCTGAGTTCAGGACTGCATTTGTTCTTGTGATGAATAAACCAACTGATATTGTGGATGATAACTATGAGAACATACAAGCACATTCTAAAAGGGTACTGGAGTTATTATTAAAGAAGAAAGGGATTGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

491

Amino Acids

53.99

Weight (kDa)

9.08

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_N	PF03952	304 - 407	1.6e-12	Enolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	720
Acc16I	TGCGCA	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	720
AccB1I	GGYRCC	1 cut(s)	1205
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	4 cut(s)	83, 338, 394, 1019
AclWI	GGATC	1 cut(s)	1064
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	577, 673
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	472, 1434
AfiI	CCNNNNNNNGG	4 cut(s)	120, 393, 506, 677
AgsI	TTSAA	6 cut(s)	149, 205, 571, 839, 910, 1109
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
Alw21I	GWGCWC	5 cut(s)	368, 596, 931, 1158, 1324
Alw26I	GTCTC	4 cut(s)	423, 471, 780, 806
Alw44I	GTGCAC	1 cut(s)	1320
AlwI	GGATC	1 cut(s)	1064
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	1 cut(s)	395
ApaLI	GTGCAC	1 cut(s)	1320
ApoI	RAATTY	2 cut(s)	577, 673
AspLEI	GCGC	3 cut(s)	558, 604, 937
AspS9I	GGNCC	3 cut(s)	174, 586, 668
AsuHPI	GGTGA	5 cut(s)	89, 235, 440, 692, 1321
AvaII	GGWCC	3 cut(s)	174, 586, 668
BaeGI	GKGCMC	1 cut(s)	1324
BaeI	ACNNNNGTAYC	4 cut(s)	281, 314, 1424, 1457
BanI	GGYRCC	1 cut(s)	1205
BanII	GRGCYC	5 cut(s)	368, 375, 596, 931, 1158
Bbv12I	GWGCWC	5 cut(s)	368, 596, 931, 1158, 1324
BccI	CCATC	2 cut(s)	102, 1253
BceAI	ACGGC	2 cut(s)	400, 936
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	4 cut(s)	423, 471, 780, 806
BfaI	CTAG	6 cut(s)	236, 323, 486, 894, 924, 1088
BfuAI	ACCTGC	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	396
Bme18I	GGWCC	3 cut(s)	174, 586, 668
BmgT120I	GGNCC	3 cut(s)	174, 586, 668
BmiI	GGNNCC	3 cut(s)	176, 587, 1207
BmsI	GCATC	6 cut(s)	51, 205, 250, 543, 662, 691
BpmI	CTGGAG	2 cut(s)	528, 1457
Bpu1102I	GCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	1136
BsaBI	GATNNNNATC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	115, 961, 1284
BsaWI	WCCGGW	1 cut(s)	1072
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 393, 506, 677
Bse1I	ACTGG	3 cut(s)	63, 511, 1440
Bse3DI	GCAATG	1 cut(s)	1274
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	115, 961, 1284
BseGI	GGATG	5 cut(s)	9, 138, 265, 653, 1399
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	120, 393, 506, 677
BseMI	GCAATG	1 cut(s)	1274
BseMII	CTCAG	6 cut(s)	116, 189, 225, 381, 609, 1332
BseNI	ACTGG	3 cut(s)	63, 511, 1440
BseRI	GAGGAG	2 cut(s)	525, 597
BseSI	GKGCMC	1 cut(s)	1324
BshFI	GGCC	1 cut(s)	397
BshNI	GGYRCC	1 cut(s)	1205
BsiHKAI	GWGCWC	5 cut(s)	368, 596, 931, 1158, 1324
BsiSI	CCGG	1 cut(s)	1073
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	4 cut(s)	120, 393, 506, 677
BsmAI	GTCTC	4 cut(s)	423, 471, 780, 806
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	2 cut(s)	566, 701
BsnI	GGCC	1 cut(s)	397
Bso31I	GGTCTC	1 cut(s)	806
Bsp1286I	GDGCHC	6 cut(s)	368, 375, 596, 931, 1158, 1324
Bsp143I	GATC	2 cut(s)	132, 1069
Bsp1720I	GCTNAGC	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	4 cut(s)	83, 338, 394, 1019
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	6 cut(s)	117, 190, 224, 380, 608, 1333
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	176, 587, 1207
BspMI	ACCTGC	1 cut(s)	720
BspPI	GGATC	1 cut(s)	1064
BspT107I	GGYRCC	1 cut(s)	1205
BspTNI	GGTCTC	1 cut(s)	806
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	1274
BsrI	ACTGG	3 cut(s)	63, 511, 1440
BssECI	CCNNGG	3 cut(s)	115, 961, 1284
BssMI	GATC	2 cut(s)	132, 1069
BssT1I	CCWWGG	3 cut(s)	115, 961, 1284
Bst4CI	ACNGT	1 cut(s)	294
BstC8I	GCNNGC	4 cut(s)	122, 265, 560, 564
BstDEI	CTNAG	6 cut(s)	125, 198, 211, 367, 595, 1341
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	5 cut(s)	9, 138, 265, 653, 1399
BstHHI	GCGC	3 cut(s)	558, 604, 937
BstKTI	GATC	2 cut(s)	135, 1072
BstMAI	GTCTC	4 cut(s)	423, 471, 780, 806
BstMBI	GATC	2 cut(s)	132, 1069
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 319, 553, 777, 1175, 1214
BstNSI	RCATGY	2 cut(s)	271, 1244
BstSLI	GKGCMC	1 cut(s)	1324
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	961
BtgZI	GCGATG	2 cut(s)	294, 714
BtsCI	GGATG	5 cut(s)	9, 138, 265, 653, 1399
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	4 cut(s)	154, 182, 195, 504
BveI	ACCTGC	1 cut(s)	720
Cac8I	GCNNGC	4 cut(s)	122, 265, 560, 564
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	3 cut(s)	558, 604, 937
Cfr13I	GGNCC	3 cut(s)	174, 586, 668
Csp6I	GTAC	2 cut(s)	471, 1433
CviAII	CATG	6 cut(s)	88, 268, 650, 962, 970, 1241
CviQI	GTAC	2 cut(s)	471, 1433
DdeI	CTNAG	6 cut(s)	125, 198, 211, 367, 595, 1341
DpnI	GATC	2 cut(s)	134, 1071
DpnII	GATC	2 cut(s)	132, 1069
EaeI	YGGCCR	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	327
Ecl136II	GAGCTC	4 cut(s)	366, 594, 929, 1156
Eco130I	CCWWGG	3 cut(s)	115, 961, 1284
Eco24I	GRGCYC	5 cut(s)	368, 375, 596, 931, 1158
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	3 cut(s)	174, 586, 668
Eco53kI	GAGCTC	4 cut(s)	366, 594, 929, 1156
Eco57I	CTGAAG	1 cut(s)	321
EcoICRI	GAGCTC	4 cut(s)	366, 594, 929, 1156
EcoO109I	RGGNCCY	1 cut(s)	174
EcoT14I	CCWWGG	3 cut(s)	115, 961, 1284
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	5 cut(s)	368, 375, 596, 931, 1158
ErhI	CCWWGG	3 cut(s)	115, 961, 1284
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	6 cut(s)	91, 271, 653, 965, 973, 1244
FalI	AAGNNNNNCTT	2 cut(s)	999, 1031
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	6 cut(s)	87, 267, 649, 961, 969, 1240
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	4 cut(s)	125, 272, 640, 1406
FriOI	GRGCYC	5 cut(s)	368, 375, 596, 931, 1158
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	6 cut(s)	236, 323, 486, 894, 924, 1088
FspI	TGCGCA	1 cut(s)	557
GlaI	GCGC	3 cut(s)	557, 603, 936
GluI	GCNGC	1 cut(s)	395
GsuI	CTGGAG	2 cut(s)	528, 1457
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	1073
HhaI	GCGC	3 cut(s)	558, 604, 937
Hin1II	CATG	6 cut(s)	91, 271, 653, 965, 973, 1244
Hin6I	GCGC	3 cut(s)	556, 602, 935
HinP1I	GCGC	3 cut(s)	556, 602, 935
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HindIII	AAGCTT	2 cut(s)	545, 1328
HinfI	GANTC	7 cut(s)	166, 187, 239, 343, 496, 966, 1234
HpaII	CCGG	1 cut(s)	1073
HphI	GGTGA	5 cut(s)	89, 235, 440, 692, 1321
Hpy166II	GTNNAC	3 cut(s)	1036, 1093, 1322
Hpy188I	TCNGA	7 cut(s)	171, 214, 301, 370, 1160, 1258, 1342
Hpy188III	TCNNGA	7 cut(s)	88, 361, 571, 589, 666, 894, 1348
Hpy8I	GTNNAC	3 cut(s)	1036, 1093, 1322
HpyAV	CCTTC	3 cut(s)	277, 296, 891
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 319, 553, 777, 1175, 1214
HpyF3I	CTNAG	6 cut(s)	125, 198, 211, 367, 595, 1341
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	6 cut(s)	91, 271, 653, 965, 973, 1244
HspAI	GCGC	3 cut(s)	556, 602, 935
Kzo9I	GATC	2 cut(s)	132, 1069
LmnI	GCTCC	1 cut(s)	389
LweI	GCATC	6 cut(s)	51, 205, 250, 543, 662, 691
MaeI	CTAG	6 cut(s)	236, 323, 486, 894, 924, 1088
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	428, 1295
MalI	GATC	2 cut(s)	134, 1071
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	2 cut(s)	132, 1069
MboII	GAAGA	3 cut(s)	127, 529, 1465
MfeI	CAATTG	3 cut(s)	104, 819, 839
MhlI	GDGCHC	6 cut(s)	368, 375, 596, 931, 1158, 1324
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	1271
Mph1103I	ATGCAT	1 cut(s)	655
MseI	TTAA	1 cut(s)	1448
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	1073
MunI	CAATTG	3 cut(s)	104, 819, 839
Mva1269I	GAATGC	2 cut(s)	566, 701
MwoI	GCNNNNNNNGC	6 cut(s)	126, 319, 553, 777, 1175, 1214
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	2 cut(s)	132, 1069
NlaIII	CATG	6 cut(s)	91, 271, 653, 965, 973, 1244
NlaIV	GGNNCC	3 cut(s)	176, 587, 1207
NmuCI	GTSAC	1 cut(s)	428
NsbI	TGCGCA	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	2 cut(s)	271, 1244
PagI	TCATGA	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PctI	GAATGC	2 cut(s)	566, 701
PfeI	GAWTC	6 cut(s)	166, 187, 239, 496, 966, 1234
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	174
Psp124BI	GAGCTC	4 cut(s)	368, 596, 931, 1158
Psp5II	RGGWCCY	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	176, 587, 1207
PspPI	GGNCC	3 cut(s)	174, 586, 668
PspPPI	RGGWCCY	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	506
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	472, 1434
RsaNI	GTAC	2 cut(s)	471, 1433
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	4 cut(s)	368, 596, 931, 1158
SaqAI	TTAA	1 cut(s)	1448
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	132, 1069
Sau96I	GGNCC	3 cut(s)	174, 586, 668
SchI	GAGTC	1 cut(s)	337
SduI	GDGCHC	6 cut(s)	368, 375, 596, 931, 1158, 1324
SfaNI	GCATC	6 cut(s)	51, 205, 250, 543, 662, 691
SinI	GGWCC	3 cut(s)	174, 586, 668
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	1115
SmoI	CTYRAG	1 cut(s)	1115
SsiI	CCGC	4 cut(s)	83, 338, 394, 1019
SspMI	CTAG	6 cut(s)	236, 323, 486, 894, 924, 1088
SstI	GAGCTC	4 cut(s)	368, 596, 931, 1158
StyI	CCWWGG	3 cut(s)	115, 961, 1284
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	2 cut(s)	494, 638
TaqII	GACCGA	1 cut(s)	685
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	6 cut(s)	166, 187, 239, 496, 966, 1234
Tru1I	TTAA	1 cut(s)	1448
Tru9I	TTAA	1 cut(s)	1448
TscAI	CASTG	4 cut(s)	161, 189, 202, 511
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	9 cut(s)	39, 127, 296, 297, 735, 958, 1146, 1254, 1385
TspRI	CASTG	4 cut(s)	161, 189, 202, 511
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	1320
VpaK11BI	GGWCC	3 cut(s)	174, 586, 668
XapI	RAATTY	2 cut(s)	577, 673
XbaI	TCTAGA	1 cut(s)	893
XceI	RCATGY	2 cut(s)	271, 1244
XspI	CTAG	6 cut(s)	236, 323, 486, 894, 924, 1088
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.