Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

10759338 .. 10764253

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTTCAAGTTACTGTGTATGGGTTTAAAAGGTGTGGGGAGGTTGTGCTAGAGGAGATGGATAGTGCTAATCAGAGAAGAATGGTTTCACTGGATCCTAAGAGCAAACAAATTAAAGTTACTGCTACATCTTCAAATGTTAAGCATACTTCTGGTGATGGGGAAGCTAAATTTCCAAGTGCAACTCTTCATATTATTCTAGAGTTGGTATCATGGGACAGAGTTCCAGAATGGATAGTTGACAAGAAAGTTATTAAGAAGGTGCTACAACTGGAGGGGAAGGGGCGTCCAAATGAAAGGGATGTTGTTACAATGGAATGGATTGGGAAATTGCAGGATGTGGGTGCATTAGAGGCCTGGCGGGCATTGATAATGATACCTCCTCATTCAACTCTCTTTTATGTGGCTGAGCTGGTATTTGTAATTGTTGTCAAAGACAAGAAATTTGAGGTTGCTAGTAAGGAGAAGGAAGGAGGGTCTTCAGACACTATTCATATAATGGCTGGTATTGATGATGATAGGAAAAACTCTCATATGTTGATGGGTTGTGTGGTGTGTTTTGGATGTAATGTCTGTCGAGATTACTGTGGCAGTCTTGCTGCAGCAATATTGGATGAAATGGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

210

Amino Acids

23.27

Weight (kDa)

6.22

Isoelectric Point (pI)

23.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	89, 102
AcsI	RAATTY	2 cut(s)	170, 443
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	8, 135, 390
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	167, 412
AluI	AGCT	2 cut(s)	167, 412
AlwI	GGATC	2 cut(s)	89, 102
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	599, 602
ApoI	RAATTY	2 cut(s)	170, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	586, 614
BccI	CCATC	3 cut(s)	52, 152, 535
BciT130I	CCWGG	1 cut(s)	358
BfaI	CTAG	3 cut(s)	50, 200, 456
BfmI	CTRYAG	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	600, 603
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	2 cut(s)	601, 604
Bme1390I	CCNGG	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	96, 276
BseBI	CCWGG	1 cut(s)	358
BseGI	GGATG	4 cut(s)	307, 343, 569, 619
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	96, 276
BseRI	GAGGAG	2 cut(s)	68, 372
BseXI	GCAGC	2 cut(s)	586, 614
BshFI	GGCC	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	94
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	2 cut(s)	89, 102
BsrI	ACTGG	2 cut(s)	96, 276
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	16, 587
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	99, 408
BstF5I	GGATG	4 cut(s)	307, 343, 569, 619
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 362
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	586, 614
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	4 cut(s)	307, 343, 569, 619
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	363
CseI	GACGC	1 cut(s)	275
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	5 cut(s)	167, 356, 407, 412, 503
CviKI_1	RGCY	5 cut(s)	167, 356, 407, 412, 503
DdeI	CTNAG	2 cut(s)	99, 408
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DraI	TTTAAA	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	1 cut(s)	216
FaiI	YATR	9 cut(s)	21, 147, 192, 214, 402, 495, 497, 534, 536
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	212
FauI	CCCGC	1 cut(s)	354
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	600, 603
FokI	GGATG	4 cut(s)	314, 350, 576, 626
Fsp4HI	GCNGC	2 cut(s)	600, 603
FspBI	CTAG	3 cut(s)	50, 200, 456
GluI	GCNGC	2 cut(s)	600, 603
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	356
HgaI	GACGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	75, 484
Hpy188III	TCNNGA	3 cut(s)	200, 227, 578
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	253, 274, 460, 464
HpyCH4III	ACNGT	2 cut(s)	16, 587
HpyCH4V	TGCA	4 cut(s)	182, 334, 347, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 362
HpyF3I	CTNAG	2 cut(s)	99, 408
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	9 cut(s)	77, 138, 240, 257, 320, 343, 370, 398, 489
Lsp1109I	GCAGC	2 cut(s)	586, 614
MaeI	CTAG	3 cut(s)	50, 200, 456
MaeIII	GTNAC	3 cut(s)	10, 118, 307
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	4 cut(s)	90, 123, 179, 471
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	5 cut(s)	111, 170, 329, 423, 443
MnlI	CCTC	8 cut(s)	34, 46, 268, 346, 390, 393, 442, 467
MroXI	GAANNNNTTC	1 cut(s)	85
MseI	TTAA	5 cut(s)	27, 114, 141, 255, 628
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	353, 362
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	601, 604
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	94
SaqAI	TTAA	5 cut(s)	27, 114, 141, 255, 628
SatI	GCNGC	2 cut(s)	600, 603
Sau3AI	GATC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	7 cut(s)	35, 45, 169, 264, 382, 414, 453
SfcI	CTRYAG	1 cut(s)	600
Sse9I	AATT	5 cut(s)	111, 170, 329, 423, 443
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	1 cut(s)	361
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	3 cut(s)	50, 200, 456
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	16, 587
TaqI	TCGA	1 cut(s)	577
TasI	AATT	5 cut(s)	111, 170, 329, 423, 443
Tru1I	TTAA	5 cut(s)	27, 114, 141, 255, 628
Tru9I	TTAA	5 cut(s)	27, 114, 141, 255, 628
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	2 cut(s)	599, 602
TspDTI	ATGAA	4 cut(s)	179, 309, 482, 630
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	2 cut(s)	170, 443
XbaI	TCTAGA	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	3 cut(s)	50, 200, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.