Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

30065590 .. 30073749

Gene Structure 8160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG294600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGGAGAATCTGTTCAATTGTTTGTGTGGGTTGTTGACGCCATTGGAGAACAGGGACATTAGTGCTGGAATCAAGGAAGAAGCAAGTAGAAGAGCTGTTGGTGATAATTCTCTCAAGGAATTGGCTCATGTCTTTGACATTAAGGCTAAATTGGAGTTGACAATTAAACTTTGTGAGAAATTGTTCAAGGAGAAGGATCAACATCAGGACATTGCCAGCATAGCTATGAAGGCTATGGTTGCAGAAGTTTCTATTCAATCACTTGCACAGCTTATTCTTGTGTCTATTTTACCGCAGTTGATTAAAGGAATTACTGCCCTGGGAATGAATACAGAGATAAAATGTGCTCTCTTGTCTCAGTTGAGTCCCAATCAAACAAGCGTTAAGTATGGGATGGCTGTGGCATGGCCGAGTAGTTTGTCAACTATGATTTTTCCGACTCTGTTTTACACAAAATATGATGCATACAAAATCCATCTCCTAGACCTAGGGCGAAACAATATATTCTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

172

Amino Acids

19.2

Weight (kDa)

7.67

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	19, 190, 260
AjnI	CCWGG	1 cut(s)	321
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	3 cut(s)	98, 227, 274
AluI	AGCT	3 cut(s)	98, 227, 274
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	410
Asp700I	GAANNNNTTC	2 cut(s)	14, 185
AspA2I	CCTAGG	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	116
AvrII	CCTAGG	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	352
BccI	CCATC	2 cut(s)	391, 486
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	2 cut(s)	485, 491
BlnI	CCTAGG	1 cut(s)	490
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	321, 322, 490
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	321, 322, 490
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	352
BslFI	GGGAC	2 cut(s)	71, 354
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	2 cut(s)	71, 354
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	3 cut(s)	321, 322, 490
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 233, 242
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	220
CseI	GACGC	1 cut(s)	49
CviAII	CATG	2 cut(s)	131, 408
CviJI	RGCY	8 cut(s)	98, 128, 149, 227, 236, 274, 401, 412
CviKI_1	RGCY	8 cut(s)	98, 128, 149, 227, 236, 274, 401, 412
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	2 cut(s)	134, 411
FaqI	GGGAC	2 cut(s)	71, 354
FatI	CATG	2 cut(s)	130, 407
FokI	GGATG	1 cut(s)	409
FspBI	CTAG	2 cut(s)	485, 491
HaeIII	GGCC	1 cut(s)	412
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	134, 411
HincII	GTYRAC	3 cut(s)	39, 162, 426
HindII	GTYRAC	3 cut(s)	39, 162, 426
HinfI	GANTC	4 cut(s)	10, 72, 367, 442
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	39, 162, 426
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	3 cut(s)	39, 162, 426
HpyAV	CCTTC	2 cut(s)	190, 226
HpyCH4V	TGCA	3 cut(s)	245, 269, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 233, 242
HpyF3I	CTNAG	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	134, 411
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	40, 54, 194, 232, 308, 335
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	485, 491
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	92, 105
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	7 cut(s)	19, 109, 122, 152, 165, 182, 312
MlyI	GAGTC	2 cut(s)	376, 436
MmeI	TCCRAC	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	14, 185
MseI	TTAA	4 cut(s)	144, 168, 306, 387
MslI	CAYNNNNRTG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	224, 233, 242
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	134, 411
NmeAIII	GCCGAG	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	14, 185
PfeI	GAWTC	2 cut(s)	10, 72
PleI	GAGTC	2 cut(s)	375, 436
PpsI	GAGTC	2 cut(s)	375, 436
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	144, 168, 306, 387
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	376, 436
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	4 cut(s)	100, 229, 276, 492
SfaNI	GCATC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	7 cut(s)	19, 109, 122, 152, 165, 182, 312
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	2 cut(s)	485, 491
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	490
TasI	AATT	7 cut(s)	19, 109, 122, 152, 165, 182, 312
TfiI	GAWTC	2 cut(s)	10, 72
Tru1I	TTAA	4 cut(s)	144, 168, 306, 387
Tru9I	TTAA	4 cut(s)	144, 168, 306, 387
TspDTI	ATGAA	2 cut(s)	245, 344
XmaJI	CCTAGG	1 cut(s)	490
XmnI	GAANNNNTTC	2 cut(s)	14, 185
XspI	CTAG	2 cut(s)	485, 491
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.