Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Reverse (-)

32531715 .. 32532990

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAACTCAAAGACCATTCTTGTTGCTTTCTTCGGAAAGGTAATACCAGGTAGTTCATATGTTCTATTGCTTGCCCTTGTTGATGGTATAGTGAGATTATGGGTGTTGGAGCGTGACCATGCTTTTGTCGGTTGGCATTCGACTAAAGATATTAAACATGACTCGTATTCTATGATTTTATCTGTACTAGCTAAATATGTTGAATCTTTAAATTCTACTTCAATTGCGGCCTCTTCATATGTTTGTGGAAAATTGATTAGTAAGGCAGCAAGATGGGATATGATTGCTGACGAGGTGAGTCACCCTGAAGTGCTTCTAGTGATTGGGAAGTATAAGTCTCGGATGGATGGGATCTGTGGTGAGCATGGTTTCTTGCATGATAAAAAATGGGGTGGCATTGTAACAGAACATGGATCACTACTGAGATGCCTTAATCTGTATAAATTGCATTCATGGGAAGCAAATGGGACTTGCAAGGAAATAATGCAGGGTGATTATGGTACTCTGAAATTCAGGTTTGAGATTATCAACTTGCTTACAGTGAAATTCATTACCTATGTTACCATTGTTGCCGACTCTTGTATAGCTGAATCTGCAGAAAATCCTCATATCAAGGAAGTGATTAGTATTGCTTTTGAGTTGCAATTTGAACTAATTATAATTTCAGCAGAGGTTGGGTTAATCATAACTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010265 GO:0010498 GO:0016043 GO:0016567 GO:0019005 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0030163 GO:0031146 GO:0031323 GO:0031399 GO:0031461 GO:0032268 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1990234 GO:2000434

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81 TIP120

Protein Analysis

233

Amino Acids

25.87

Weight (kDa)

6.3

Isoelectric Point (pI)

19.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	359, 421
AcsI	RAATTY	3 cut(s)	211, 509, 545
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	186, 502
AgsI	TTSAA	3 cut(s)	203, 222, 650
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	191, 587
AluI	AGCT	2 cut(s)	191, 587
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	359, 421
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	211, 509, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuHPI	GGTGA	4 cut(s)	293, 307, 371, 503
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	4 cut(s)	77, 267, 337, 341
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	188, 317
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	2 cut(s)	228, 267
BlsI	GCNGC	2 cut(s)	229, 268
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	348, 352
BseMII	CTCAG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	2 cut(s)	136, 448
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	351, 413
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	359, 421
BssMI	GATC	2 cut(s)	351, 413
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	348, 352
BstKTI	GATC	2 cut(s)	354, 416
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	2 cut(s)	351, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	348, 352
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	72
CsiI	ACCWGGT	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	185, 501
CviAII	CATG	6 cut(s)	119, 158, 365, 377, 410, 453
CviJI	RGCY	3 cut(s)	191, 230, 587
CviKI_1	RGCY	3 cut(s)	191, 230, 587
CviQI	GTAC	2 cut(s)	185, 501
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	2 cut(s)	353, 415
DpnII	GATC	2 cut(s)	351, 413
DraI	TTTAAA	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	6 cut(s)	122, 161, 368, 380, 413, 456
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	6 cut(s)	118, 157, 364, 376, 409, 452
FauNDI	CATATG	2 cut(s)	58, 238
Fnu4HI	GCNGC	2 cut(s)	228, 267
FokI	GGATG	2 cut(s)	355, 359
Fsp4HI	GCNGC	2 cut(s)	228, 267
FspBI	CTAG	2 cut(s)	188, 317
GluI	GCNGC	2 cut(s)	228, 267
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	6 cut(s)	122, 161, 368, 380, 413, 456
HinfI	GANTC	5 cut(s)	161, 203, 298, 575, 590
HphI	GGTGA	4 cut(s)	293, 307, 371, 503
Hpy188I	TCNGA	3 cut(s)	35, 342, 507
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4V	TGCA	6 cut(s)	376, 448, 474, 487, 596, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	6 cut(s)	122, 161, 368, 380, 413, 456
Kzo9I	GATC	2 cut(s)	351, 413
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	33, 60, 318, 473, 499
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	416
MabI	ACCWGGT	1 cut(s)	46
MaeI	CTAG	2 cut(s)	188, 317
MaeIII	GTNAC	4 cut(s)	113, 299, 400, 559
MalI	GATC	2 cut(s)	353, 415
MboI	GATC	2 cut(s)	351, 413
MboII	GAAGA	2 cut(s)	22, 225
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	9 cut(s)	211, 222, 251, 443, 509, 545, 644, 654, 660
MlyI	GAGTC	3 cut(s)	155, 307, 569
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	241, 286, 615, 664
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	4 cut(s)	153, 209, 432, 680
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	2 cut(s)	136, 448
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeI	CATATG	2 cut(s)	58, 238
NdeII	GATC	2 cut(s)	351, 413
NlaIII	CATG	6 cut(s)	122, 161, 368, 380, 413, 456
NmuCI	GTSAC	2 cut(s)	113, 299
PctI	GAATGC	2 cut(s)	136, 448
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	203, 590
PkrI	GCNGC	2 cut(s)	229, 268
PleI	GAGTC	3 cut(s)	155, 306, 569
PpsI	GAGTC	3 cut(s)	155, 306, 569
PsiI	TTATAA	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	2 cut(s)	186, 502
RsaNI	GTAC	2 cut(s)	185, 501
SaqAI	TTAA	4 cut(s)	153, 209, 432, 680
SatI	GCNGC	2 cut(s)	228, 267
Sau3AI	GATC	2 cut(s)	351, 413
SchI	GAGTC	3 cut(s)	155, 307, 569
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	8 cut(s)	42, 52, 193, 297, 518, 557, 589, 675
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	594
Sse9I	AATT	9 cut(s)	211, 222, 251, 443, 509, 545, 644, 654, 660
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	188, 317
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	1 cut(s)	140
TasI	AATT	9 cut(s)	211, 222, 251, 443, 509, 545, 644, 654, 660
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	203, 590
Tru1I	TTAA	4 cut(s)	153, 209, 432, 680
Tru9I	TTAA	4 cut(s)	153, 209, 432, 680
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	2 cut(s)	113, 299
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	113, 299
TspDTI	ATGAA	5 cut(s)	17, 45, 225, 441, 538
TspRI	CASTG	1 cut(s)	546
XapI	RAATTY	3 cut(s)	211, 509, 545
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	188, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.