Rroxscaffold_3G00239170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001538
Physical Location & Seq
Forward (+)
28852955 .. 28862797
9843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239170.1

Sequence Viewer

Length: 1044 bp
ATGTCTAAGCTTGTAACTTCTGGTAGTGTTGCTCTCTATCATGGATACAATGAACACAAGCGATTCAAATGTGTTAACAATATCAAGATATCACTTCTAGTGGAGTTATTTGGATCAAGTGACACACAAGAAGCATTTCAAGTTCTTCAAACTATTCTGACTCCATTTCTTATTGCTGATTACTGCCATGCAAGGTCACCCAATGCTTTTGGAGCTACCACTAAATGGCAATTAAATGGTTTGGAATCGGCTGATCAAGAACACATTCAACGCATGAAGAACAAAGAAAGGATGTCAACCAAAGTGCACAACCTAGAGGATGGCAACTTAGTCTCCAAGTCTTCAAGATTGATCCACACAGCATTAACCAATCGGATAATGCCACGTCGGCTCGCTATCTCCTCGCTCACGAGCGCTAATGCTCACACCTTAGTGGCAATCTCGAGCTTCGCGCTCATGCCTTCACGGCATCCACGAGCTTCGCGCTCATGCCTTCGCCGCATCCACGAGCTTCGCGCTCACGCCTTCACGAACCTCCGAGCTCTCCTCTCACGCTTTGGCGACACCCCCGAGCTCCACGCTCACGCCTTCGCGGCAACCCCGAGCTTCGAGCTCATGCCTTCACGGCATCCACGAGATTCTGCTCACGAGCTTCGCTCTCATGCCTTCTCGCATCCACGAGCTTTGCGCTCACGCCTTCACGGCACCTCCGAGCTCTCCGCTCACGCTTTGGCGACACCCTCGAGCTCCGCGCTCACGAGCTCTAACGCTCACGCCTTCGCGGCAACCCCGAGCTTCGAGCTCATACCTTCACGGTATCCACGAGATTCCCGCTCACGAGCTTCGCTCTCATGCCTTCTCGGCATCCACGAGCTTCGCGCTTACGGCACCCACGAGCTTCCGCTCACGCCTTCGCCGCAACCTCGAGCTTCCGCTCACGCCTTCGCGGCAACCCCGAGCTTCCCATGTGGCGACCCGAATGGTATACCACAGCGCCGTAATATTAAGCCAATAGGAGCTCGATACGTCGTAGACGTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.29

Weight (kDa)

10.3

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 704, 887
AccB7I CCANNNNNTGG 1 cut(s) 225
AccBSI CCGCTC 4 cut(s) 722, 834, 904, 935
AccI GTMKAC 2 cut(s) 985, 1032
AccII CGCG 8 cut(s) 452, 484, 516, 593, 752, 782, 879, 947
AclWI GGATC 2 cut(s) 121, 346
AfeI AGCGCT 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 5 cut(s) 67, 140, 149, 269, 345
AjiI CACGTC 1 cut(s) 386
AleI CACNNNNGTG 1 cut(s) 431
Alw21I GWGCWC 9 cut(s) 309, 544, 576, 615, 717, 749, 764, 804, 1021
Alw26I GTCTC 1 cut(s) 337
Alw44I GTGCAC 1 cut(s) 305
AlwI GGATC 2 cut(s) 121, 346
Ama87I CYCGRG 7 cut(s) 442, 569, 601, 742, 790, 924, 955
Aor51HI AGCGCT 1 cut(s) 415
ApaLI GTGCAC 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 135, 264
AspLEI GCGC 8 cut(s) 416, 454, 486, 518, 690, 754, 881, 996
AsuHPI GGTGA 1 cut(s) 189
AvaI CYCGRG 7 cut(s) 442, 569, 601, 742, 790, 924, 955
BaeGI GKGCMC 1 cut(s) 309
BanI GGYRCC 2 cut(s) 704, 887
BanII GRGCYC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 9 cut(s) 309, 544, 576, 615, 717, 749, 764, 804, 1021
BccI CCATC 1 cut(s) 314
BceAI ACGGC 5 cut(s) 482, 641, 718, 901, 981
BciVI GTATCC 2 cut(s) 38, 828
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 2 cut(s) 98, 314
BfoI RGCGCY 2 cut(s) 417, 997
BfuI GTATCC 2 cut(s) 38, 828
BglI GCCNNNNNGGC 8 cut(s) 388, 466, 593, 625, 702, 782, 861, 947
BisI GCNGC 5 cut(s) 499, 594, 783, 917, 948
BlsI GCNGC 5 cut(s) 500, 595, 784, 918, 949
BmeT110I CYCGRG 7 cut(s) 442, 569, 601, 742, 790, 924, 955
BmgBI CACGTC 1 cut(s) 386
BmiI GGNNCC 2 cut(s) 706, 889
BmsI GCATC 5 cut(s) 478, 510, 637, 682, 873
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 6 cut(s) 531, 563, 641, 673, 831, 863
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 692, 722
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseGI GGATG 7 cut(s) 297, 325, 469, 501, 628, 673, 864
BseLI CCNNNNNNNGG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 391, 536
BseSI GKGCMC 1 cut(s) 309
Bsh1236I CGCG 8 cut(s) 452, 484, 516, 593, 752, 782, 879, 947
BshNI GGYRCC 2 cut(s) 704, 887
BsiHKAI GWGCWC 9 cut(s) 309, 544, 576, 615, 717, 749, 764, 804, 1021
BsiHKCI CYCGRG 7 cut(s) 442, 569, 601, 742, 790, 924, 955
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 337
BsoBI CYCGRG 7 cut(s) 442, 569, 601, 742, 790, 924, 955
Bsp1286I GDGCHC 9 cut(s) 309, 544, 576, 615, 717, 749, 764, 804, 1021
Bsp143I GATC 3 cut(s) 113, 253, 351
BspFNI CGCG 8 cut(s) 452, 484, 516, 593, 752, 782, 879, 947
BspLI GGNNCC 2 cut(s) 706, 889
BspPI GGATC 2 cut(s) 121, 346
BspT107I GGYRCC 2 cut(s) 704, 887
BsrBI CCGCTC 4 cut(s) 722, 834, 904, 935
BssMI GATC 3 cut(s) 113, 253, 351
BssNAI GTATAC 1 cut(s) 986
Bst1107I GTATAC 1 cut(s) 986
Bst4CI ACNGT 1 cut(s) 816
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 6, 328, 430
BstEII GGTNACC 1 cut(s) 195
BstF5I GGATG 7 cut(s) 297, 325, 469, 501, 628, 673, 864
BstFNI CGCG 8 cut(s) 452, 484, 516, 593, 752, 782, 879, 947
BstH2I RGCGCY 2 cut(s) 417, 997
BstHHI GCGC 8 cut(s) 416, 454, 486, 518, 690, 754, 881, 996
BstKTI GATC 3 cut(s) 116, 256, 354
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 3 cut(s) 113, 253, 351
BstPI GGTNACC 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 8 cut(s) 452, 484, 516, 593, 752, 782, 879, 947
BstV2I GAAGAC 1 cut(s) 333
BstZ17I GTATAC 1 cut(s) 986
BsuI GTATCC 2 cut(s) 38, 828
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 7 cut(s) 297, 325, 469, 501, 628, 673, 864
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 8 cut(s) 416, 454, 486, 518, 690, 754, 881, 996
CspCI CAANNNNNGTGG 2 cut(s) 666, 701
CviAII CATG 9 cut(s) 41, 188, 274, 457, 489, 616, 662, 852, 966
DdeI CTNAG 3 cut(s) 6, 328, 430
DpnI GATC 3 cut(s) 115, 255, 353
DpnII GATC 3 cut(s) 113, 253, 351
Ecl136II GAGCTC 8 cut(s) 542, 574, 613, 715, 747, 762, 802, 1019
Eco24I GRGCYC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
Eco32I GATATC 1 cut(s) 90
Eco47III AGCGCT 1 cut(s) 415
Eco53kI GAGCTC 8 cut(s) 542, 574, 613, 715, 747, 762, 802, 1019
Eco88I CYCGRG 7 cut(s) 442, 569, 601, 742, 790, 924, 955
Eco91I GGTNACC 1 cut(s) 195
EcoICRI GAGCTC 8 cut(s) 542, 574, 613, 715, 747, 762, 802, 1019
EcoO65I GGTNACC 1 cut(s) 195
EcoRV GATATC 1 cut(s) 90
EcoT38I GRGCYC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
FaeI CATG 9 cut(s) 44, 191, 277, 460, 492, 619, 665, 855, 969
FatI CATG 9 cut(s) 40, 187, 273, 456, 488, 615, 661, 851, 965
FauI CCCGC 1 cut(s) 839
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 2 cut(s) 985, 1032
Fnu4HI GCNGC 5 cut(s) 499, 594, 783, 917, 948
FokI GGATG 7 cut(s) 304, 332, 456, 488, 615, 660, 851
FriOI GRGCYC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
Fsp4HI GCNGC 5 cut(s) 499, 594, 783, 917, 948
FspBI CTAG 2 cut(s) 98, 314
GlaI GCGC 8 cut(s) 415, 453, 485, 517, 689, 753, 880, 995
GluI GCNGC 5 cut(s) 499, 594, 783, 917, 948
HaeII RGCGCY 2 cut(s) 417, 997
HhaI GCGC 8 cut(s) 416, 454, 486, 518, 690, 754, 881, 996
Hin1II CATG 9 cut(s) 44, 191, 277, 460, 492, 619, 665, 855, 969
Hin6I GCGC 8 cut(s) 414, 452, 484, 516, 688, 752, 879, 994
HinP1I GCGC 8 cut(s) 414, 452, 484, 516, 688, 752, 879, 994
HincII GTYRAC 2 cut(s) 76, 297
HindII GTYRAC 2 cut(s) 76, 297
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 5 cut(s) 63, 160, 245, 638, 827
HpaI GTTAAC 1 cut(s) 76
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 5 cut(s) 76, 297, 307, 986, 1033
Hpy188I TCNGA 4 cut(s) 159, 375, 539, 712
Hpy188III TCNNGA 9 cut(s) 85, 257, 345, 409, 442, 529, 647, 757, 837
Hpy8I GTNNAC 5 cut(s) 76, 297, 307, 986, 1033
Hpy99I CGWCG 2 cut(s) 390, 1031
HpyCH4III ACNGT 1 cut(s) 816
HpyCH4IV ACGT 3 cut(s) 385, 1026, 1035
HpyCH4V TGCA 2 cut(s) 191, 307
HpyF3I CTNAG 3 cut(s) 6, 328, 430
HpySE526I ACGT 3 cut(s) 385, 1026, 1035
Hsp92II CATG 9 cut(s) 44, 191, 277, 460, 492, 619, 665, 855, 969
HspAI GCGC 8 cut(s) 414, 452, 484, 516, 688, 752, 879, 994
Ksp22I TGATCA 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 113, 253, 351
LmnI GCTCC 4 cut(s) 212, 579, 752, 1016
LpnPI CCDG 1 cut(s) 6
LweI GCATC 5 cut(s) 478, 510, 637, 682, 873
MaeI CTAG 2 cut(s) 98, 314
MaeII ACGT 3 cut(s) 385, 1026, 1035
MaeIII GTNAC 3 cut(s) 13, 119, 195
MalI GATC 3 cut(s) 115, 255, 353
MbiI CCGCTC 4 cut(s) 722, 834, 904, 935
MboI GATC 3 cut(s) 113, 253, 351
MboII GAAGA 3 cut(s) 137, 289, 333
MhlI GDGCHC 9 cut(s) 309, 544, 576, 615, 717, 749, 764, 804, 1021
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 7 cut(s) 310, 412, 545, 557, 718, 751, 933
MroXI GAANNNNTTC 2 cut(s) 135, 264
MseI TTAA 4 cut(s) 75, 233, 365, 1005
MslI CAYNNNNRTG 1 cut(s) 431
MvnI CGCG 8 cut(s) 452, 484, 516, 593, 752, 782, 879, 947
NdeII GATC 3 cut(s) 113, 253, 351
NlaIII CATG 9 cut(s) 44, 191, 277, 460, 492, 619, 665, 855, 969
NlaIV GGNNCC 2 cut(s) 706, 889
NmeAIII GCCGAG 1 cut(s) 840
NmuCI GTSAC 2 cut(s) 119, 195
OliI CACNNNNGTG 1 cut(s) 431
PaeR7I CTCGAG 3 cut(s) 442, 742, 924
PcsI WCGNNNNNNNCGW 7 cut(s) 472, 631, 708, 820, 867, 891, 1032
PdmI GAANNNNTTC 2 cut(s) 135, 264
PfeI GAWTC 4 cut(s) 63, 245, 638, 827
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 5 cut(s) 500, 595, 784, 918, 949
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp124BI GAGCTC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
PspEI GGTNACC 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 706, 889
PspXI VCTCGAGB 2 cut(s) 742, 924
RseI CAYNNNNRTG 1 cut(s) 431
SacI GAGCTC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
SaqAI TTAA 4 cut(s) 75, 233, 365, 1005
SatI GCNGC 5 cut(s) 499, 594, 783, 917, 948
Sau3AI GATC 3 cut(s) 113, 253, 351
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 9 cut(s) 309, 544, 576, 615, 717, 749, 764, 804, 1021
SfaNI GCATC 5 cut(s) 478, 510, 637, 682, 873
Sfr274I CTCGAG 3 cut(s) 442, 742, 924
SlaI CTCGAG 3 cut(s) 442, 742, 924
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 3 cut(s) 442, 742, 924
SmoI CTYRAG 3 cut(s) 442, 742, 924
Sse9I AATT 1 cut(s) 230
SspI AATATT 1 cut(s) 1003
SspMI CTAG 2 cut(s) 98, 314
SstI GAGCTC 8 cut(s) 544, 576, 615, 717, 749, 764, 804, 1021
TaaI ACNGT 1 cut(s) 816
TaiI ACGT 3 cut(s) 388, 1029, 1038
TaqI TCGA 6 cut(s) 443, 609, 743, 798, 925, 1021
TasI AATT 1 cut(s) 230
TauI GCSGC 5 cut(s) 501, 596, 785, 919, 950
TfiI GAWTC 4 cut(s) 63, 245, 638, 827
Tru1I TTAA 4 cut(s) 75, 233, 365, 1005
Tru9I TTAA 4 cut(s) 75, 233, 365, 1005
TseFI GTSAC 2 cut(s) 119, 195
Tsp45I GTSAC 2 cut(s) 119, 195
TspDTI ATGAA 2 cut(s) 66, 290
Van91I CCANNNNNTGG 1 cut(s) 225
VneI GTGCAC 1 cut(s) 305
XhoI CTCGAG 3 cut(s) 442, 742, 924
XmiI GTMKAC 2 cut(s) 985, 1032
XmnI GAANNNNTTC 2 cut(s) 135, 264
XspI CTAG 2 cut(s) 98, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.