Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033439.1

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2067

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 733 bp

gtggagggatgatattgcggatcttggtatgcaagtccagcgtatccattctcgtcgccggttgtcgataatctccgatttcatatacgggagaatttgtgagttcgagcacagagagatggcgaacattgcaatgactggtatactggagaagatgacggggaaggataaggattatagatacatggcaacatctgatttgttgaatgaattaaacaaagacaattttaaagccgatgctgatctagagataaagttgtcgaatattattattcagcaactcgatgatgttgccggtgatgtatctggattggctgtcaaatgtcttgctccattagttaagaaggtcagcgagccacgagtcgtggagatgacaaataaactttgtgagaaattgctaaaggagaaggatcaacatcgtgacattgccagcatagctatgaaggctattgttgcagaagtttctactcaatcacttgcacagtctattcttgtgtctattttacctcagttgattaaaggaattactgccccaggaatgagcacagagataaaatgtgaatgtcttgatatcttatgtgatgtccttcataagtttggcaatcttatggcaaccgaccatgagctactattaggtgctctcttgtctcagttgagttccaatcaggccagcgtgaggaagaaaactgtgtcatgcatcgtttgttctagtaaatcttccatagatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

243

Amino Acids

26.98

Weight (kDa)

6.25

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	28, 418
AcsI	RAATTY	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	2 cut(s)	438, 626
AluI	AGCT	2 cut(s)	438, 626
Alw21I	GWGCWC	3 cut(s)	112, 546, 641
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	2 cut(s)	28, 418
AoxI	GGCC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	309
BauI	CACGAG	1 cut(s)	358
Bbv12I	GWGCWC	3 cut(s)	112, 546, 641
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	246, 709
BfuI	GTATCC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	2 cut(s)	227, 706
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	2 cut(s)	241, 415
BsaJI	CCNNGG	1 cut(s)	533
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse118I	RCCGGY	2 cut(s)	58, 294
Bse1I	ACTGG	2 cut(s)	143, 151
Bse3DI	GCAATG	3 cut(s)	127, 139, 424
Bse8I	GATNNNNATC	2 cut(s)	241, 415
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	1 cut(s)	14
BseJI	GATNNNNATC	2 cut(s)	241, 415
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	3 cut(s)	127, 139, 424
BseMII	CTCAG	2 cut(s)	522, 663
BseNI	ACTGG	2 cut(s)	143, 151
BshFI	GGCC	1 cut(s)	669
BsiHKAI	GWGCWC	3 cut(s)	112, 546, 641
BsiSI	CCGG	2 cut(s)	59, 295
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	669
Bsp1286I	GDGCHC	3 cut(s)	112, 546, 641
Bsp143I	GATC	3 cut(s)	20, 242, 410
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	2 cut(s)	521, 662
BspPI	GGATC	2 cut(s)	28, 418
BsrDI	GCAATG	3 cut(s)	127, 139, 424
BsrFI	RCCGGY	2 cut(s)	58, 294
BsrI	ACTGG	2 cut(s)	143, 151
BssAI	RCCGGY	2 cut(s)	58, 294
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	3 cut(s)	20, 242, 410
BssNAI	GTATAC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	358
Bst1107I	GTATAC	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	484, 689
BstC8I	GCNNGC	3 cut(s)	354, 431, 671
BstDEI	CTNAG	2 cut(s)	508, 649
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	23, 245, 413
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	3 cut(s)	20, 242, 410
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 129, 435, 444, 453
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	354, 431, 671
Cfr10I	RCCGGY	2 cut(s)	58, 294
CviAII	CATG	3 cut(s)	185, 621, 694
CviJI	RGCY	7 cut(s)	234, 315, 356, 438, 447, 626, 669
CviKI_1	RGCY	7 cut(s)	234, 315, 356, 438, 447, 626, 669
DdeI	CTNAG	2 cut(s)	508, 649
DpnI	GATC	3 cut(s)	22, 244, 412
DpnII	GATC	3 cut(s)	20, 242, 410
DraI	TTTAAA	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	699
FaeI	CATG	3 cut(s)	188, 624, 697
FatI	CATG	3 cut(s)	184, 620, 693
FblI	GTMKAC	1 cut(s)	143
FokI	GGATG	1 cut(s)	21
FspBI	CTAG	2 cut(s)	246, 709
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	2 cut(s)	59, 295
Hin1II	CATG	3 cut(s)	188, 624, 697
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	59, 295
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	77, 197
Hpy188III	TCNNGA	4 cut(s)	246, 307, 420, 567
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	158, 338, 401, 437, 597
HpyCH4III	ACNGT	2 cut(s)	484, 689
HpyCH4V	TGCA	5 cut(s)	32, 132, 456, 480, 697
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 129, 435, 444, 453
HpyF3I	CTNAG	2 cut(s)	508, 649
Hsp92II	CATG	3 cut(s)	188, 624, 697
Kzo9I	GATC	3 cut(s)	20, 242, 410
LmnI	GCTCC	1 cut(s)	335
LweI	GCATC	2 cut(s)	227, 706
MaeI	CTAG	2 cut(s)	246, 709
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	3 cut(s)	22, 244, 412
MboI	GATC	3 cut(s)	20, 242, 410
MboII	GAAGA	3 cut(s)	164, 692, 709
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	3 cut(s)	112, 546, 641
MluCI	AATT	5 cut(s)	94, 210, 224, 393, 523
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	2 cut(s)	517, 670
Mph1103I	ATGCAT	1 cut(s)	699
MseI	TTAA	4 cut(s)	213, 229, 340, 517
MslI	CAYNNNNRTG	2 cut(s)	132, 438
MspI	CCGG	2 cut(s)	59, 295
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	5 cut(s)	38, 129, 435, 444, 453
NdeII	GATC	3 cut(s)	20, 242, 410
NlaIII	CATG	3 cut(s)	188, 624, 697
NmuCI	GTSAC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	699
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	20
RseI	CAYNNNNRTG	2 cut(s)	132, 438
SaqAI	TTAA	4 cut(s)	213, 229, 340, 517
Sau3AI	GATC	3 cut(s)	20, 242, 410
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	3 cut(s)	112, 546, 641
SetI	ASST	5 cut(s)	349, 440, 509, 628, 638
SfaNI	GCATC	2 cut(s)	227, 706
SmiMI	CAYNNNNRTG	2 cut(s)	132, 438
Sse9I	AATT	5 cut(s)	94, 210, 224, 393, 523
SsiI	CCGC	1 cut(s)	18
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	2 cut(s)	246, 709
StyD4I	CCNGG	1 cut(s)	533
TaaI	ACNGT	2 cut(s)	484, 689
TaqI	TCGA	4 cut(s)	66, 106, 261, 283
TasI	AATT	5 cut(s)	94, 210, 224, 393, 523
Tru1I	TTAA	4 cut(s)	213, 229, 340, 517
Tru9I	TTAA	4 cut(s)	213, 229, 340, 517
TseFI	GTSAC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	4 cut(s)	71, 223, 456, 579
XapI	RAATTY	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	2 cut(s)	246, 709
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.