FvH4_4g00983

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
949224 .. 951897
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00983.t1

Sequence Viewer

Length: 2052 bp
ATGAAGGAAAAGGAAGCTGCGTTTCGACTTGAATTGGACAAGACTCTGGCGTCGTTCAAGTCCGAGATGGAAAAGGTGATGCAAAATGTGTTCGATCAATTTCGATTGGGACGAACCTCTCAGTTGACACCACCACCATTCTCGACGCAGCAACCACCAAAGGAGCACTCGTCAACTCCACTTTCTGATTCCGAAACCACAATTCCCATTGTTCACTCTTATCTATGGAAGGCTCGCTGCAAGGAAGTTGCTCGCACATCGATGAGGGCCAATGGAGGAGTGAAGAAACCGCACAGTTCTAGGCTGGGAGCATCCACGCTCCACAAGACTGGCAAATACCAGAAGCTCAATTTCCGGAGTTTAGCTGCATCGCTTCTGCTAGACAATGCCATCTTGGCTCAGTCGAACCACAACCCTACATCTTTTGGGCTGGTAAGCGGTACTAGCTCTAGTATTCCTAATTTTAGTTTCATCATGAACAGTGGTTGTGGTGGTATTGATTATGTGCCTGGTGCTAAGTTATCTGGAGTTGATGTGATTTGTGATGATGAGAAGAGGAAATCTGATATGAAAGTTAAGATGGACAATGGAGATGAATATGCAATTTGGATGAATTATAAAGAAGAGGATGAGTATTTTGACAAATCTGTTGGGAGAGATGATGAAGTTGATGATGGCCATGCGATATCAAAGCTGGAGCTTAGCACTCAACTTGTTAGAAATGATAAGCTTACTATTGTTCCCAGGGAAAAAGTTCACAATGATGGTATGGTAATTAGTGGACTAAATCATGTGATTGAGATTATGATCACTGGAGAGGCAAGGGTCATTTGTAGAAGGTTCGATGAGAATGTGTTGGGTGACGCCATTGAGAAGGTTTTGGTTCCTGACAGTGTGGTCAATTTATCCGGCTGTTTAGAGACTAAAGATAACTGCAATCCTGCCAAGCTTGAAAGTAATGATAATTCAGTGGAGCAGGAGGTGGAAGTTGTGATAATGGGAGGTAGTAAGGTACAACAACAATTTGTTTCTGAGCCGTTTTCATCAGTGCCAATCAACTATGACATGGGTATATGTTCTATGGTGATTGTGATATGCCCAAAGAAGATTTGTCATTATGTACTGCTACCATGCTCCTCTGGGTTTGATAAGAAGGTTAGTGATAAAGTTTGCATAGACAAATTTGTGTTGTTTGAGGTTACTGCTACATCTTCAAATGTTGGTACAACTCTTGCTTTGAGAAGTAAATTGATGTCTATTATTGTAGCTGATAGTATTCCTTCCATGTTTGTATATATATGTGGGGATCAAGTTAAGCATACTTCTGGTGATGGGGAAGCTAAATTTCCAAGTGCAACTCTTCATATTATTCTAGAGTTGGTATCATGGGACACAGTTCCAGAATGGATAGTTGACAAGAAAGTTATTAAGAAGGTGCTACAACTGGAGGGGAATGGACGTCCAAATGAAAGGGATGTTGTTACAATGGAATGGATTGGGAAATTGCAGGATAGTAAGGAACTTTTGAAGGATCATGGGGAAAGAGAAGAACCATGTGAGTTCAACATAGATGTAGAGCAAGTCACTATGGAAGATGACAAAGTTGTAGTCATGACAATGAGAAAGGGTGAGATAGCTCTTGTGATTATGTTCTCTGAGTATGCAATGGGTGCATTAGAGGCCTGGCCGGCGTTGATAGTGGTACCTCCTCATTCAACTTTCTTTTATGTGGTTGAGCCGGTATTTGTAATTGTTGTCAAGGACAAGAAATTTGAGGTTGCTAATAAGGAGAAGGAAGGAGGGTCTTCAGACACTATTTATATAATGGCTGGTATTGATGATGGTAAGACTTTTGATCTCCATCAATCTGCCTACATCGGGGTTCAAGTGCATGTCAAGGACCAAATTATTGAGATGTCAAACACATGTGGTGGAAATGTAAATGTCCAAGAAATGTATGATGTAGTTGGCGTTATTGAAGATTTTCATAAGCAAGTTGCCATAAAGCATTGCTTTGAATGTGATGCCTACTTGCAGCCTCAGAGAACTTGA

Protein Analysis

684

Amino Acids

76.06

Weight (kDa)

5.26

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 487 - 579 4.4e-07 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AasI GACNNNNNNGTC 2 cut(s) 49, 896
AatII GACGTC 1 cut(s) 1462
Acc65I GGTACC 1 cut(s) 1702
AccB1I GGYRCC 1 cut(s) 1702
AccIII TCCGGA 1 cut(s) 354
AciI CCGC 2 cut(s) 290, 438
AclWI GGATC 2 cut(s) 1314, 1539
AcoI YGGCCR 2 cut(s) 676, 1685
AcsI RAATTY 3 cut(s) 1181, 1343, 1769
AcuI CTGAAG 1 cut(s) 1791
AcyI GRCGYC 3 cut(s) 50, 864, 1459
AfaI GTAC 5 cut(s) 442, 1014, 1122, 1225, 1704
AfiI CCNNNNNNNGG 1 cut(s) 1878
AflIII ACRYGT 1 cut(s) 1925
AjnI CCWGG 3 cut(s) 508, 743, 1682
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 914
AlwI GGATC 2 cut(s) 1314, 1539
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 4 cut(s) 267, 676, 1680, 1685
ApeKI GCWGC 5 cut(s) 17, 148, 237, 365, 2035
ApoI RAATTY 3 cut(s) 1181, 1343, 1769
ArsI GACNNNNNNTTYG 4 cut(s) 1593, 1625, 1754, 1786
Asp700I GAANNNNTTC 2 cut(s) 753, 1983
Asp718I GGTACC 1 cut(s) 1702
AspS9I GGNCC 2 cut(s) 267, 1900
AsuHPI GGTGA 5 cut(s) 88, 872, 1096, 1340, 1640
AvaII GGWCC 1 cut(s) 1900
BalI TGGCCA 1 cut(s) 678
BanI GGYRCC 1 cut(s) 1702
BbsI GAAGAC 1 cut(s) 1797
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 5 cut(s) 4, 160, 224, 352, 2047
BccI CCATC 8 cut(s) 61, 398, 574, 668, 758, 1325, 1835, 1869
BceAI ACGGC 1 cut(s) 1021
BciT130I CCWGG 3 cut(s) 510, 745, 1684
BclI TGATCA 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 914
BfaI CTAG 5 cut(s) 300, 380, 444, 450, 1373
BglI GCCNNNNNGGC 2 cut(s) 395, 1688
BisI GCNGC 5 cut(s) 18, 149, 238, 366, 2036
BlpI GCTNAGC 1 cut(s) 701
BlsI GCNGC 5 cut(s) 19, 150, 239, 367, 2037
Bme1390I CCNGG 3 cut(s) 510, 745, 1684
Bme18I GGWCC 1 cut(s) 1900
BmgT120I GGNCC 2 cut(s) 267, 1900
BmiI GGNNCC 2 cut(s) 885, 1704
BmrFI CCNGG 3 cut(s) 510, 745, 1684
BmsI GCATC 4 cut(s) 69, 320, 377, 2014
BpiI GAAGAC 1 cut(s) 1797
BpmI CTGGAG 4 cut(s) 546, 716, 834, 1466
Bpu1102I GCTNAGC 1 cut(s) 701
Bsa29I ATCGAT 1 cut(s) 260
BsaBI GATNNNNATC 2 cut(s) 806, 1860
BsaHI GRCGYC 3 cut(s) 50, 864, 1459
BsaJI CCNNGG 2 cut(s) 743, 744
BsaWI WCCGGW 1 cut(s) 354
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 519, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 1878
Bse118I RCCGGY 2 cut(s) 1687, 1738
Bse1I ACTGG 3 cut(s) 334, 817, 1449
Bse3DI GCAATG 2 cut(s) 1671, 2008
Bse8I GATNNNNATC 2 cut(s) 806, 1860
BseAI TCCGGA 1 cut(s) 354
BseBI CCWGG 3 cut(s) 510, 745, 1684
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 743, 744
BseGI GGATG 4 cut(s) 311, 615, 634, 1480
BseJI GATNNNNATC 2 cut(s) 806, 1860
BseLI CCNNNNNNNGG 1 cut(s) 1878
BseMI GCAATG 2 cut(s) 1671, 2008
BseMII CTCAG 4 cut(s) 134, 413, 1023, 1647
BseNI ACTGG 3 cut(s) 334, 817, 1449
BseRI GAGGAG 3 cut(s) 291, 1126, 1698
BseXI GCAGC 5 cut(s) 4, 160, 224, 352, 2047
BseYI CCCAGC 1 cut(s) 304
BshFI GGCC 4 cut(s) 269, 678, 1682, 1687
BshNI GGYRCC 1 cut(s) 1702
BshVI ATCGAT 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 4 cut(s) 355, 909, 1688, 1739
BslFI GGGAC 2 cut(s) 123, 1403
BslI CCNNNNNNNGG 1 cut(s) 1878
BsmAI GTCTC 1 cut(s) 914
BsmFI GGGAC 2 cut(s) 123, 1403
BsnI GGCC 4 cut(s) 269, 678, 1682, 1687
Bsp1286I GDGCHC 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 354
Bsp143I GATC 5 cut(s) 94, 807, 1306, 1531, 1855
Bsp1720I GCTNAGC 1 cut(s) 701
BspACI CCGC 2 cut(s) 290, 438
BspANI GGCC 4 cut(s) 269, 678, 1682, 1687
BspCNI CTCAG 4 cut(s) 133, 412, 1024, 1648
BspDI ATCGAT 1 cut(s) 260
BspEI TCCGGA 1 cut(s) 354
BspHI TCATGA 2 cut(s) 474, 1611
BspLI GGNNCC 2 cut(s) 885, 1704
BspPI GGATC 2 cut(s) 1314, 1539
BspT107I GGYRCC 1 cut(s) 1702
BsrDI GCAATG 2 cut(s) 1671, 2008
BsrFI RCCGGY 2 cut(s) 1687, 1738
BsrI ACTGG 3 cut(s) 334, 817, 1449
BssAI RCCGGY 2 cut(s) 1687, 1738
BssECI CCNNGG 2 cut(s) 743, 744
BssMI GATC 5 cut(s) 94, 807, 1306, 1531, 1855
BssNI GRCGYC 3 cut(s) 50, 864, 1459
Bst2UI CCWGG 3 cut(s) 510, 745, 1684
Bst4CI ACNGT 4 cut(s) 296, 482, 893, 1396
Bst6I CTCTTC 3 cut(s) 548, 618, 1365
BstACI GRCGYC 3 cut(s) 50, 864, 1459
BstAPI GCANNNNNTGC 1 cut(s) 1670
BstC8I GCNNGC 3 cut(s) 235, 253, 1689
BstDEI CTNAG 7 cut(s) 120, 399, 516, 701, 1032, 1656, 2040
BstF5I GGATG 4 cut(s) 311, 615, 634, 1480
BstKTI GATC 5 cut(s) 97, 810, 1309, 1534, 1858
BstMAI GTCTC 1 cut(s) 914
BstMBI GATC 5 cut(s) 94, 807, 1306, 1531, 1855
BstMWI GCNNNNNNNGC 5 cut(s) 395, 444, 1670, 1679, 1688
BstNI CCWGG 3 cut(s) 510, 745, 1684
BstNSI RCATGY 2 cut(s) 1895, 1929
BstSCI CCNGG 3 cut(s) 508, 743, 1682
BstV1I GCAGC 5 cut(s) 4, 160, 224, 352, 2047
BstV2I GAAGAC 1 cut(s) 1797
BstXI CCANNNNNNTGG 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 260
BsuRI GGCC 4 cut(s) 269, 678, 1682, 1687
BsuTUI ATCGAT 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 4 cut(s) 311, 615, 634, 1480
BtsIMutI CAGTG 5 cut(s) 487, 810, 898, 975, 1053
Cac8I GCNNGC 3 cut(s) 235, 253, 1689
CciI TCATGA 2 cut(s) 474, 1611
Cfr10I RCCGGY 2 cut(s) 1687, 1738
Cfr13I GGNCC 2 cut(s) 267, 1900
ClaI ATCGAT 1 cut(s) 260
CseI GACGC 3 cut(s) 39, 154, 872
Csp6I GTAC 5 cut(s) 441, 1013, 1121, 1224, 1703
CviQI GTAC 5 cut(s) 441, 1013, 1121, 1224, 1703
DdeI CTNAG 7 cut(s) 120, 399, 516, 701, 1032, 1656, 2040
DpnI GATC 5 cut(s) 96, 809, 1308, 1533, 1857
DpnII GATC 5 cut(s) 94, 807, 1306, 1531, 1855
DrdI GACNNNNNNGTC 2 cut(s) 49, 896
DseDI GACNNNNNNGTC 2 cut(s) 49, 896
EaeI YGGCCR 2 cut(s) 676, 1685
Eam1104I CTCTTC 3 cut(s) 548, 618, 1365
EarI CTCTTC 3 cut(s) 548, 618, 1365
Eco147I AGGCCT 1 cut(s) 1682
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 1900
Eco57I CTGAAG 1 cut(s) 1791
EcoRII CCWGG 3 cut(s) 508, 743, 1682
EcoRV GATATC 1 cut(s) 687
FalI AAGNNNNNCTT 2 cut(s) 1997, 2029
FaqI GGGAC 2 cut(s) 123, 1403
FbaI TGATCA 1 cut(s) 807
Fnu4HI GCNGC 5 cut(s) 18, 149, 238, 366, 2036
FokI GGATG 4 cut(s) 298, 622, 641, 1487
Fsp4HI GCNGC 5 cut(s) 18, 149, 238, 366, 2036
FspBI CTAG 5 cut(s) 300, 380, 444, 450, 1373
GluI GCNGC 5 cut(s) 18, 149, 238, 366, 2036
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 4 cut(s) 546, 716, 834, 1466
HaeIII GGCC 4 cut(s) 269, 678, 1682, 1687
HapII CCGG 4 cut(s) 355, 909, 1688, 1739
HgaI GACGC 3 cut(s) 39, 154, 872
Hin1I GRCGYC 3 cut(s) 50, 864, 1459
HincII GTYRAC 3 cut(s) 126, 174, 1414
HindII GTYRAC 3 cut(s) 126, 174, 1414
HindIII AAGCTT 2 cut(s) 728, 947
HinfI GANTC 2 cut(s) 43, 188
HpaII CCGG 4 cut(s) 355, 909, 1688, 1739
HphI GGTGA 5 cut(s) 88, 872, 1096, 1340, 1640
Hpy166II GTNNAC 6 cut(s) 126, 174, 214, 757, 782, 1414
Hpy188I TCNGA 8 cut(s) 64, 187, 193, 565, 1033, 1657, 1810, 2043
Hpy188III TCNNGA 8 cut(s) 142, 355, 475, 525, 887, 1373, 1400, 1612
Hpy8I GTNNAC 6 cut(s) 126, 174, 214, 757, 782, 1414
Hpy99I CGWCG 2 cut(s) 55, 148
HpyAV CCTTC 9 cut(s) 223, 831, 868, 1147, 1290, 1426, 1522, 1786, 1790
HpyCH4III ACNGT 4 cut(s) 296, 482, 893, 1396
HpyCH4IV ACGT 1 cut(s) 1459
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 444, 1670, 1679, 1688
HpyF3I CTNAG 7 cut(s) 120, 399, 516, 701, 1032, 1656, 2040
HpySE526I ACGT 1 cut(s) 1459
Hsp92I GRCGYC 3 cut(s) 50, 864, 1459
Kpn2I TCCGGA 1 cut(s) 354
KpnI GGTACC 1 cut(s) 1706
KroI GCCGGC 1 cut(s) 1687
KroNI GCCGGC 1 cut(s) 1689
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 5 cut(s) 94, 807, 1306, 1531, 1855
LmnI GCTCC 6 cut(s) 163, 308, 324, 697, 973, 1139
Lsp1109I GCAGC 5 cut(s) 4, 160, 224, 352, 2047
LweI GCATC 4 cut(s) 69, 320, 377, 2014
MaeI CTAG 5 cut(s) 300, 380, 444, 450, 1373
MaeII ACGT 1 cut(s) 1459
MaeIII GTNAC 4 cut(s) 860, 1198, 1480, 1582
MalI GATC 5 cut(s) 96, 809, 1308, 1533, 1857
MboI GATC 5 cut(s) 94, 807, 1306, 1531, 1855
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 678
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 1 cut(s) 37
Mox20I TGGCCA 1 cut(s) 678
MroI TCCGGA 1 cut(s) 354
MroNI GCCGGC 1 cut(s) 1687
MroXI GAANNNNTTC 2 cut(s) 753, 1983
MscI TGGCCA 1 cut(s) 678
MseI TTAA 3 cut(s) 576, 1314, 1428
MslI CAYNNNNRTG 3 cut(s) 260, 762, 1616
Msp20I TGGCCA 1 cut(s) 678
MspI CCGG 4 cut(s) 355, 909, 1688, 1739
MspR9I CCNGG 3 cut(s) 510, 745, 1684
MvaI CCWGG 3 cut(s) 510, 745, 1684
MwoI GCNNNNNNNGC 5 cut(s) 395, 444, 1670, 1679, 1688
NaeI GCCGGC 1 cut(s) 1689
NdeII GATC 5 cut(s) 94, 807, 1306, 1531, 1855
NgoMIV GCCGGC 1 cut(s) 1687
NlaIV GGNNCC 2 cut(s) 885, 1704
NmuCI GTSAC 2 cut(s) 860, 1582
NspI RCATGY 2 cut(s) 1895, 1929
PagI TCATGA 2 cut(s) 474, 1611
PasI CCCWGGG 1 cut(s) 744
PceI AGGCCT 1 cut(s) 1682
PciI ACATGT 1 cut(s) 1925
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 1689
PdmI GAANNNNTTC 2 cut(s) 753, 1983
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 5 cut(s) 19, 150, 239, 367, 2037
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PscI ACATGT 1 cut(s) 1925
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 508, 743, 1682
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 3 cut(s) 508, 743, 1682
PspN4I GGNNCC 2 cut(s) 885, 1704
PspPI GGNCC 2 cut(s) 267, 1900
RsaI GTAC 5 cut(s) 442, 1014, 1122, 1225, 1704
RsaNI GTAC 5 cut(s) 441, 1013, 1121, 1224, 1703
RseI CAYNNNNRTG 3 cut(s) 260, 762, 1616
SaqAI TTAA 3 cut(s) 576, 1314, 1428
SatI GCNGC 5 cut(s) 18, 149, 238, 366, 2036
Sau3AI GATC 5 cut(s) 94, 807, 1306, 1531, 1855
Sau96I GGNCC 2 cut(s) 267, 1900
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 3 cut(s) 510, 745, 1684
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 4 cut(s) 69, 320, 377, 2014
SinI GGWCC 1 cut(s) 1900
SmiMI CAYNNNNRTG 3 cut(s) 260, 762, 1616
SseBI AGGCCT 1 cut(s) 1682
SsiI CCGC 2 cut(s) 290, 438
SspMI CTAG 5 cut(s) 300, 380, 444, 450, 1373
StuI AGGCCT 1 cut(s) 1682
StyD4I CCNGG 3 cut(s) 508, 743, 1682
TaaI ACNGT 4 cut(s) 296, 482, 893, 1396
TaiI ACGT 1 cut(s) 1462
TaqI TCGA 7 cut(s) 25, 93, 103, 143, 260, 404, 843
TatI WGTACW 1 cut(s) 1120
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 3 cut(s) 576, 1314, 1428
Tru9I TTAA 3 cut(s) 576, 1314, 1428
TscAI CASTG 5 cut(s) 487, 817, 898, 975, 1053
TseFI GTSAC 2 cut(s) 860, 1582
TseI GCWGC 5 cut(s) 17, 148, 237, 365, 2035
Tsp45I GTSAC 2 cut(s) 860, 1582
TspRI CASTG 5 cut(s) 487, 817, 898, 975, 1053
VpaK11BI GGWCC 1 cut(s) 1900
XapI RAATTY 3 cut(s) 1181, 1343, 1769
XbaI TCTAGA 1 cut(s) 1372
XceI RCATGY 2 cut(s) 1895, 1929
XmnI GAANNNNTTC 2 cut(s) 753, 1983
XspI CTAG 5 cut(s) 300, 380, 444, 450, 1373
ZraI GACGTC 1 cut(s) 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.