Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

31120269 .. 31121435

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39362.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGATGAGACAACAAGAGTCTACAGTGGAAGTTCTGTCTCTTGCACCTAATGAAGTCCTGCGAGTTTTTGCTTGTGGAGCAAGCTCATTAGTAGCTACTTTAGGAACTGCTATGAGTGACTGCATTCATCAAGATGTACTGATGACTGCAAAAGTGTTAGAGTGCAGAATGTTCAAAAAGGATGTTGTTACAGTGAAATTAGTTGGAAAACTGCAAGATGATAATAGAGTTAGTCCTCATCTATTTTTGGTGGAAGTTGATAAGCCAACTTCTCATGTAGGACTGGTTTTTGAGAAGGAGGAGGGCTTCATGGTTATTGGCTATGATATCACTGATGAGATTGCTTTTGATGAACTAGGGGTGGTTGAAATTGCTAGCAAAATACTAGTCATGGTTATAACTAGAGTGGATGATGTTCTGAAATTCTCAAGCATGGGTAGCATGGAAGTGTTGATTGTTGGCATGTCAAATATCATTGTTCCTGAGCCAATTTGTGTTATCTGGATAACAAAGCTAGAAGGTGACTCTCTCTGGATAACTAGTGGTGATGTGTGCAGACCAGCTGTTGTTGACCATCTCGCCAATAAGGGAGCAGCTGCAACAACAATTTTCGTAGTTACACTGTTCAGATTTGAACAAGTTTACTTGAATACAAAAGAGGGCAGAGGAAAGGTGCTTGGAACTCACTCAACTCAGGCTTATATTGCTGGAGCTATTGCAGATGTTGTTGGCTCCAATTCTAAGTCAATCTTTGCTTTTTGTACAAATGCTAAACCCTTGCTGTTATTTCTTGCTGATGGAATATCGAAACCCATGTCCTCAAGTTCTTATGCTTCTGCATTGTCTAAAGAATGCGTAGGTGCTTCCGCAGTAAGCAACCAGTTGGACAGGTCTATGAAGGCTCCAATATTTTCATGCTTGGGTGATCTAACTCTAGCTCTGATCATGATTTTGTACAGCAAATGGATTGGCTTGTCATCAGTTATATACATGGAGGGACTTGCATTGTCTTTGCTCAAAGCTTTTGAGCCACATAATTACTATAACAGTGATGCAGACTATTTCATGAGAGGGTTTGAATGGAGATCTTGCAGAGGAGTGCAGCACTTGACTCTTAATGTGAAACTTGAGGTCAAGTTTAATAGGGGGGATGGATTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0023052 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0038023 GO:0042277 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xpo1

Protein Analysis

389

Amino Acids

42.47

Weight (kDa)

5.47

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	1 cut(s)	870
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	3 cut(s)	141, 766, 959
AgsI	TTSAA	5 cut(s)	178, 371, 638, 652, 1082
AhlI	ACTAGT	2 cut(s)	388, 542
AluBI	AGCT	8 cut(s)	87, 98, 517, 566, 599, 716, 941, 1025
AluI	AGCT	8 cut(s)	87, 98, 517, 566, 599, 716, 941, 1025
Alw26I	GTCTC	2 cut(s)	4, 45
ApeKI	GCWGC	3 cut(s)	596, 599, 1105
ApoI	RAATTY	1 cut(s)	425
ArsI	GACNNNNNNTTYG	4 cut(s)	375, 407, 803, 835
AsuHPI	GGTGA	3 cut(s)	536, 560, 938
AsuNHI	GCTAGC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	586, 608, 1117
BccI	CCATC	3 cut(s)	585, 794, 1148
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	4, 45
BcuI	ACTAGT	2 cut(s)	388, 542
BfaI	CTAG	7 cut(s)	359, 378, 389, 405, 518, 543, 938
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	1088
BisI	GCNGC	3 cut(s)	597, 600, 1106
BlsI	GCNGC	3 cut(s)	598, 601, 1107
BmiI	GGNNCC	2 cut(s)	736, 906
BmsI	GCATC	1 cut(s)	1045
BmtI	GCTAGC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	3 cut(s)	415, 808, 1151
Bse1I	ACTGG	2 cut(s)	291, 883
BseGI	GGATG	3 cut(s)	190, 418, 1159
BseMII	CTCAG	2 cut(s)	477, 710
BseNI	ACTGG	2 cut(s)	291, 883
BseRI	GAGGAG	2 cut(s)	317, 1113
BseXI	GCAGC	3 cut(s)	586, 608, 1117
BsgI	GTGCAG	3 cut(s)	187, 577, 1124
BslFI	GGGAC	1 cut(s)	1014
BsmAI	GTCTC	2 cut(s)	4, 45
BsmFI	GGGAC	1 cut(s)	1014
BsmI	GAATGC	2 cut(s)	126, 860
Bsp1407I	TGTACA	2 cut(s)	764, 957
Bsp143I	GATC	3 cut(s)	928, 945, 1088
BspACI	CCGC	1 cut(s)	870
BspCNI	CTCAG	2 cut(s)	478, 709
BspHI	TCATGA	2 cut(s)	948, 1068
BspLI	GGNNCC	2 cut(s)	736, 906
BspOI	GCTAGC	1 cut(s)	381
BsrGI	TGTACA	2 cut(s)	764, 957
BsrI	ACTGG	2 cut(s)	291, 883
BssMI	GATC	3 cut(s)	928, 945, 1088
Bst4CI	ACNGT	4 cut(s)	28, 196, 627, 1052
BstAUI	TGTACA	2 cut(s)	764, 957
BstC8I	GCNNGC	2 cut(s)	85, 379
BstDEI	CTNAG	3 cut(s)	486, 696, 744
BstF5I	GGATG	3 cut(s)	190, 418, 1159
BstKTI	GATC	3 cut(s)	931, 948, 1091
BstMAI	GTCTC	2 cut(s)	4, 45
BstMBI	GATC	3 cut(s)	928, 945, 1088
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 441, 707
BstNSI	RCATGY	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	586, 608, 1117
BstX2I	RGATCY	1 cut(s)	1088
BstYI	RGATCY	1 cut(s)	1088
BtsCI	GGATG	3 cut(s)	190, 418, 1159
BtsIMutI	CAGTG	5 cut(s)	33, 201, 333, 623, 1057
Cac8I	GCNNGC	2 cut(s)	85, 379
CciI	TCATGA	2 cut(s)	948, 1068
Csp6I	GTAC	3 cut(s)	140, 765, 958
CviQI	GTAC	3 cut(s)	140, 765, 958
DdeI	CTNAG	3 cut(s)	486, 696, 744
DpnI	GATC	3 cut(s)	930, 947, 1090
DpnII	GATC	3 cut(s)	928, 945, 1088
Eco32I	GATATC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	331
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	1 cut(s)	1014
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	597, 600, 1106
FokI	GGATG	2 cut(s)	197, 425
Fsp4HI	GCNGC	3 cut(s)	597, 600, 1106
FspBI	CTAG	7 cut(s)	359, 378, 389, 405, 518, 543, 938
GluI	GCNGC	3 cut(s)	597, 600, 1106
GsuI	CTGGAG	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	1023
HinfI	GANTC	3 cut(s)	20, 527, 1114
HphI	GGTGA	3 cut(s)	536, 560, 938
Hpy166II	GTNNAC	3 cut(s)	24, 574, 646
Hpy188I	TCNGA	3 cut(s)	423, 632, 945
Hpy188III	TCNNGA	6 cut(s)	134, 485, 505, 535, 949, 1069
Hpy8I	GTNNAC	3 cut(s)	24, 574, 646
HpyAV	CCTTC	3 cut(s)	292, 515, 895
HpyCH4III	ACNGT	4 cut(s)	28, 196, 627, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 441, 707
HpyF3I	CTNAG	3 cut(s)	486, 696, 744
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	3 cut(s)	928, 945, 1088
LmnI	GCTCC	5 cut(s)	80, 593, 713, 740, 910
Lsp1109I	GCAGC	3 cut(s)	586, 608, 1117
LweI	GCATC	1 cut(s)	1045
MaeI	CTAG	7 cut(s)	359, 378, 389, 405, 518, 543, 938
MaeIII	GTNAC	4 cut(s)	119, 190, 524, 619
MalI	GATC	3 cut(s)	930, 947, 1090
MboI	GATC	3 cut(s)	928, 945, 1088
MflI	RGATCY	1 cut(s)	1088
MluCI	AATT	7 cut(s)	200, 372, 425, 492, 609, 739, 1039
MlyI	GAGTC	3 cut(s)	29, 521, 1108
MmeI	TCCRAC	2 cut(s)	187, 867
MseI	TTAA	2 cut(s)	1119, 1143
MslI	CAYNNNNRTG	2 cut(s)	135, 449
MspA1I	CMGCKG	2 cut(s)	566, 599
Mva1269I	GAATGC	2 cut(s)	126, 860
MwoI	GCNNNNNNNGC	3 cut(s)	80, 441, 707
NdeII	GATC	3 cut(s)	928, 945, 1088
NheI	GCTAGC	1 cut(s)	377
NlaIV	GGNNCC	2 cut(s)	736, 906
NmuCI	GTSAC	2 cut(s)	119, 524
NspI	RCATGY	1 cut(s)	469
PagI	TCATGA	2 cut(s)	948, 1068
PctI	GAATGC	2 cut(s)	126, 860
PkrI	GCNGC	3 cut(s)	598, 601, 1107
PleI	GAGTC	3 cut(s)	28, 521, 1108
PpsI	GAGTC	3 cut(s)	28, 521, 1108
PsiI	TTATAA	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	736, 906
PsuI	RGATCY	1 cut(s)	1088
PvuII	CAGCTG	2 cut(s)	566, 599
RsaI	GTAC	3 cut(s)	141, 766, 959
RsaNI	GTAC	3 cut(s)	140, 765, 958
RseI	CAYNNNNRTG	2 cut(s)	135, 449
SaqAI	TTAA	2 cut(s)	1119, 1143
SatI	GCNGC	3 cut(s)	597, 600, 1106
Sau3AI	GATC	3 cut(s)	928, 945, 1088
SchI	GAGTC	3 cut(s)	29, 521, 1108
SfaNI	GCATC	1 cut(s)	1045
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	135, 449
SmlI	CTYRAG	3 cut(s)	430, 823, 1130
SmoI	CTYRAG	3 cut(s)	430, 823, 1130
SpeI	ACTAGT	2 cut(s)	388, 542
Sse9I	AATT	7 cut(s)	200, 372, 425, 492, 609, 739, 1039
SsiI	CCGC	1 cut(s)	870
SspI	AATATT	1 cut(s)	912
SspMI	CTAG	7 cut(s)	359, 378, 389, 405, 518, 543, 938
TaaI	ACNGT	4 cut(s)	28, 196, 627, 1052
TaqI	TCGA	1 cut(s)	809
TasI	AATT	7 cut(s)	200, 372, 425, 492, 609, 739, 1039
TatI	WGTACW	3 cut(s)	139, 764, 957
Tru1I	TTAA	2 cut(s)	1119, 1143
Tru9I	TTAA	2 cut(s)	1119, 1143
TscAI	CASTG	5 cut(s)	33, 201, 340, 630, 1057
TseFI	GTSAC	2 cut(s)	119, 524
TseI	GCWGC	3 cut(s)	596, 599, 1105
Tsp45I	GTSAC	2 cut(s)	119, 524
TspDTI	ATGAA	7 cut(s)	69, 119, 301, 369, 906, 914, 1057
TspRI	CASTG	5 cut(s)	33, 201, 340, 630, 1057
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	7 cut(s)	359, 378, 389, 405, 518, 543, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.