Rroxscaffold_2G00130360

Abnormal spindle-like microcephaly-associated protein homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
66500176 .. 66503282
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130360.1

Sequence Viewer

Length: 1410 bp
ATGGGGCCGAGGAGGGCCGGAGATCCACCACAATATTCATCAACACCGCCGCGTCCACCGACCTGTAATTTGCGGATGAAGCTCCAAGTCGAGTTAGCAGAGACGGCGGCGGGATTTCGTGAACTTCACAAATGTATGGCATCAATGGCGACAGAGCGGGCTATATTCCGGTCCGAGATATTAAACGAATTGCGGAAATTTCGGTTGGAGCGAACAGCTCGGTTGAGGCCGCCGCGCCGCCGCCACCACCACCACCGGAAACGGCGGATCCCTACCACTACCAAGACCAAAAAGCACCAACTCCGCCGCCTCCATTTCTGTTCGCACCCCCAACACACGGCGCTACGGCTCCAATCCTTCAAATCGCAGCCGCAAAGAACCGCTATGATCCAATGTAGTCTTAACCCCACCGTGTTTATTCACAATATCTTACCGGGTGGTATAGATGGAAGAGTGAGTTTGCATTTTGTTAGTAAGATGGAGACAAAAGCAAACATTGTTGAGAAGATGTTTGATGGAAATTGGAAGTGGAAATCTCAAATCACTTTTGGAACTTCAAGACGTGTGATTTGTGTCAAAGAGTTTAATGTGGATTTCTTTGGATTTTATATGGTGTTAGATAAGAAGTGTTTGGAAAAGACAATTTGTAATCTGCACTTTTGCATGTCATCTTTGAATTTGAGGAAATACACGAAGCTATTTGTTGCTATGCATGGCGGAGAGAATGAAACCAGATTTTCAATCCTTCACCATTGGTTCCCCATTTCTTCGAATGATGCGCACGGACAAGCAACCAAAAGTTCTAGCAGAATTGAAGCTCTTGTCATTGATCGGGAAAACAATTTTCAGCGAGGTGATTCTTATCTTGACATGGTTACTGGACTTTTCAAAAATGATTTCAGCTTATCTTCTTCAAGGAATAAGGAGGGCCTCATATTAGATTTAGGTCTTTGTTGTGGAACAATTGATGTATCTTATTTAGAGATATTTAATGGTGTTTTTGAGGTGACGGCAGCCATTCAATTTTTGAAGGATGACTGCTATATCCTAATGACAATGGTTGTTCCATCGTATACAAACAAAAAGCACATGCCAAGTTGTGGCACTGCTCTGCATTATCTTGAGGCTGGTATTGTTTTATATGATGATGAAAAGATGATTGTGGAAGACGATTTTGCTGATGGAGACAAGGAACCTACTATTTCCTTGATTCGGAATATGTTTGTTCATTTAAAGGTGCATGCAACGAAGTCCTTTGATGAAAAATGGGTGGGAGAAATCGCAAGGAAAATTATCATGGTTATGATAAATGCATGGCTTTACTACGTTTACATCACCGCCTATACCACACCGATTGTTGGAGTTTGTAAAACCCCGCAACTTTCGGATATGAGATCGAAACTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

54.03

Weight (kDa)

9.46

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 780
AccB7I CCANNNNNTGG 1 cut(s) 1100
AccBSI CCGCTC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 1073
AccII CGCG 2 cut(s) 52, 235
AclWI GGATC 4 cut(s) 17, 262, 275, 382
AcsI RAATTY 2 cut(s) 197, 676
AfiI CCNNNNNNNGG 4 cut(s) 337, 1100, 1212, 1358
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 9 cut(s) 361, 558, 676, 741, 815, 889, 915, 1022, 1030
AjiI CACGTC 1 cut(s) 563
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 5 cut(s) 82, 218, 697, 818, 903
AluI AGCT 5 cut(s) 82, 218, 697, 818, 903
Alw26I GTCTC 3 cut(s) 95, 476, 1179
AlwI GGATC 4 cut(s) 17, 262, 275, 382
AoxI GGCC 4 cut(s) 5, 15, 227, 928
ApeKI GCWGC 2 cut(s) 367, 1013
ApoI RAATTY 2 cut(s) 197, 676
ArsI GACNNNNNNTTYG 4 cut(s) 52, 84, 552, 584
AspLEI GCGC 3 cut(s) 237, 343, 781
AspS9I GGNCC 4 cut(s) 5, 15, 171, 928
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 4 cut(s) 740, 866, 1018, 1327
AsuII TTCGAA 1 cut(s) 770
AvaII GGWCC 1 cut(s) 171
BamHI GGATCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 1173
BbvI GCAGC 2 cut(s) 379, 1025
BccI CCATC 5 cut(s) 440, 472, 509, 1075, 1175
BceAI ACGGC 5 cut(s) 120, 278, 354, 362, 1026
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 3 cut(s) 95, 476, 1179
BfaI CTAG 1 cut(s) 804
BfoI RGCGCY 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 4 cut(s) 5, 15, 171, 928
BmiI GGNNCC 5 cut(s) 6, 269, 350, 758, 1194
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 2 cut(s) 149, 766
BpiI GAAGAC 1 cut(s) 1173
Bpu14I TTCGAA 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 1142
BpuMI CCSGG 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 2 cut(s) 168, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 337, 1100, 1212, 1358
Bse1I ACTGG 1 cut(s) 883
Bse8I GATNNNNATC 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 81, 1039
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 4 cut(s) 337, 1100, 1212, 1358
BseNI ACTGG 1 cut(s) 883
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 379, 1025
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 2 cut(s) 52, 235
BshFI GGCC 4 cut(s) 7, 17, 229, 930
BsiSI CCGG 4 cut(s) 18, 169, 256, 434
BslI CCNNNNNNNGG 4 cut(s) 337, 1100, 1212, 1358
BsmAI GTCTC 3 cut(s) 95, 476, 1179
BsmBI CGTCTC 1 cut(s) 95
BsnI GGCC 4 cut(s) 7, 17, 229, 930
Bsp119I TTCGAA 1 cut(s) 770
Bsp143I GATC 5 cut(s) 22, 267, 387, 829, 1394
BspANI GGCC 4 cut(s) 7, 17, 229, 930
BspFNI CGCG 2 cut(s) 52, 235
BspLI GGNNCC 5 cut(s) 6, 269, 350, 758, 1194
BspPI GGATC 4 cut(s) 17, 262, 275, 382
BspT104I TTCGAA 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 883
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 5 cut(s) 22, 267, 387, 829, 1394
BssNAI GTATAC 1 cut(s) 1074
Bst1107I GTATAC 1 cut(s) 1074
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 159, 1242
BstF5I GGATG 2 cut(s) 81, 1039
BstFNI CGCG 2 cut(s) 52, 235
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 3 cut(s) 237, 343, 781
BstKTI GATC 5 cut(s) 25, 270, 390, 832, 1397
BstMAI GTCTC 3 cut(s) 95, 476, 1179
BstMBI GATC 5 cut(s) 22, 267, 387, 829, 1394
BstMWI GCNNNNNNNGC 3 cut(s) 79, 104, 146
BstNSI RCATGY 3 cut(s) 667, 1093, 1244
BstSCI CCNGG 1 cut(s) 433
BstUI CGCG 2 cut(s) 52, 235
BstV1I GCAGC 2 cut(s) 379, 1025
BstV2I GAAGAC 1 cut(s) 1173
BstX2I RGATCY 2 cut(s) 22, 267
BstYI RGATCY 2 cut(s) 22, 267
BstZ17I GTATAC 1 cut(s) 1074
BsuRI GGCC 4 cut(s) 7, 17, 229, 930
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 81, 1039
BtsI GCAGTG 1 cut(s) 1104
BtsIMutI CAGTG 1 cut(s) 1104
Cac8I GCNNGC 2 cut(s) 159, 1242
CfoI GCGC 3 cut(s) 237, 343, 781
Cfr13I GGNCC 4 cut(s) 5, 15, 171, 928
CpoI CGGWCCG 1 cut(s) 171
CseI GACGC 1 cut(s) 41
CspCI CAANNNNNGTGG 2 cut(s) 1336, 1371
CspI CGGWCCG 1 cut(s) 171
CviAII CATG 7 cut(s) 664, 713, 871, 1090, 1241, 1297, 1314
DpnI GATC 5 cut(s) 24, 269, 389, 831, 1396
DpnII GATC 5 cut(s) 22, 267, 387, 829, 1394
DraI TTTAAA 1 cut(s) 1233
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 3 cut(s) 280, 293, 732
Eco47I GGWCC 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 928
EcoT22I ATGCAT 2 cut(s) 714, 1315
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 7 cut(s) 667, 716, 874, 1093, 1244, 1300, 1317
FatI CATG 7 cut(s) 663, 712, 870, 1089, 1240, 1296, 1313
FauI CCCGC 3 cut(s) 103, 150, 1383
FblI GTMKAC 1 cut(s) 1073
FokI GGATG 2 cut(s) 88, 1046
FspAI RTGCGCAY 1 cut(s) 780
FspBI CTAG 1 cut(s) 804
FspI TGCGCA 1 cut(s) 780
GlaI GCGC 3 cut(s) 236, 342, 780
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 4 cut(s) 7, 17, 229, 930
HapII CCGG 4 cut(s) 18, 169, 256, 434
HgaI GACGC 1 cut(s) 41
HhaI GCGC 3 cut(s) 237, 343, 781
Hin1II CATG 7 cut(s) 667, 716, 874, 1093, 1244, 1300, 1317
Hin6I GCGC 3 cut(s) 235, 341, 779
HinP1I GCGC 3 cut(s) 235, 341, 779
HinfI GANTC 2 cut(s) 857, 1210
HpaII CCGG 4 cut(s) 18, 169, 256, 434
HphI GGTGA 4 cut(s) 740, 866, 1018, 1327
Hpy166II GTNNAC 4 cut(s) 56, 122, 1074, 1330
Hpy188I TCNGA 4 cut(s) 175, 1215, 1387, 1406
Hpy188III TCNNGA 5 cut(s) 119, 558, 833, 866, 1121
Hpy8I GTNNAC 4 cut(s) 56, 122, 1074, 1330
HpyAV CCTTC 3 cut(s) 367, 755, 1024
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 562, 1326
HpyCH4V TGCA 8 cut(s) 463, 655, 663, 712, 1114, 1240, 1244, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 104, 146
HpySE526I ACGT 2 cut(s) 562, 1326
Hsp92II CATG 7 cut(s) 667, 716, 874, 1093, 1244, 1300, 1317
HspAI GCGC 3 cut(s) 235, 341, 779
Kzo9I GATC 5 cut(s) 22, 267, 387, 829, 1394
LmnI GCTCC 3 cut(s) 87, 208, 354
LpnPI CCDG 8 cut(s) 31, 76, 182, 269, 447, 745, 864, 1113
Lsp1109I GCAGC 2 cut(s) 379, 1025
LweI GCATC 2 cut(s) 149, 766
MaeI CTAG 1 cut(s) 804
MaeII ACGT 2 cut(s) 562, 1326
MaeIII GTNAC 2 cut(s) 874, 1006
MalI GATC 5 cut(s) 24, 269, 389, 831, 1396
MbiI CCGCTC 1 cut(s) 157
MboI GATC 5 cut(s) 22, 267, 387, 829, 1394
MboII GAAGA 6 cut(s) 462, 517, 759, 900, 903, 1178
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 2 cut(s) 22, 267
MmeI TCCRAC 2 cut(s) 186, 1339
Mph1103I ATGCAT 2 cut(s) 714, 1315
MseI TTAA 5 cut(s) 182, 402, 585, 990, 1232
MslI CAYNNNNRTG 1 cut(s) 1301
MspI CCGG 4 cut(s) 18, 169, 256, 434
MspR9I CCNGG 1 cut(s) 435
MunI CAATTG 1 cut(s) 963
MvnI CGCG 2 cut(s) 52, 235
MwoI GCNNNNNNNGC 3 cut(s) 79, 104, 146
NciI CCSGG 1 cut(s) 435
NdeII GATC 5 cut(s) 22, 267, 387, 829, 1394
NlaIII CATG 7 cut(s) 667, 716, 874, 1093, 1244, 1300, 1317
NlaIV GGNNCC 5 cut(s) 6, 269, 350, 758, 1194
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 1006
NsbI TGCGCA 1 cut(s) 780
NsiI ATGCAT 2 cut(s) 714, 1315
NspI RCATGY 3 cut(s) 667, 1093, 1244
NspV TTCGAA 1 cut(s) 770
PaeI GCATGC 1 cut(s) 1244
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PfeI GAWTC 2 cut(s) 857, 1210
PflMI CCANNNNNTGG 1 cut(s) 1100
PspN4I GGNNCC 5 cut(s) 6, 269, 350, 758, 1194
PspPI GGNCC 4 cut(s) 5, 15, 171, 928
PsuI RGATCY 2 cut(s) 22, 267
RseI CAYNNNNRTG 1 cut(s) 1301
Rsr2I CGGWCCG 1 cut(s) 171
RsrII CGGWCCG 1 cut(s) 171
SaqAI TTAA 5 cut(s) 182, 402, 585, 990, 1232
Sau3AI GATC 5 cut(s) 22, 267, 387, 829, 1394
Sau96I GGNCC 4 cut(s) 5, 15, 171, 928
ScrFI CCNGG 1 cut(s) 435
SfaNI GCATC 2 cut(s) 149, 766
SfuI TTCGAA 1 cut(s) 770
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 1301
SmlI CTYRAG 1 cut(s) 1121
SmoI CTYRAG 1 cut(s) 1121
SphI GCATGC 1 cut(s) 1244
SspI AATATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 565, 1329
TaqI TCGA 3 cut(s) 90, 770, 1397
TauI GCSGC 8 cut(s) 52, 110, 232, 235, 240, 243, 309, 373
TfiI GAWTC 2 cut(s) 857, 1210
Tru1I TTAA 5 cut(s) 182, 402, 585, 990, 1232
Tru9I TTAA 5 cut(s) 182, 402, 585, 990, 1232
TscAI CASTG 1 cut(s) 1111
TseFI GTSAC 1 cut(s) 1006
TseI GCWGC 2 cut(s) 367, 1013
Tsp45I GTSAC 1 cut(s) 1006
TspDTI ATGAA 6 cut(s) 27, 92, 741, 1164, 1217, 1275
TspGWI ACGGA 1 cut(s) 798
TspRI CASTG 1 cut(s) 1111
Van91I CCANNNNNTGG 1 cut(s) 1100
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 2 cut(s) 197, 676
XceI RCATGY 3 cut(s) 667, 1093, 1244
XmiI GTMKAC 1 cut(s) 1073
XspI CTAG 1 cut(s) 804
Zsp2I ATGCAT 2 cut(s) 714, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.