Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001538

Physical Location & Seq

Genomic Coordinates Forward (+)

20473218 .. 20473574

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27353.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGTCAGATTATTAGTTCAGTGGCTGACTCCTCAAATAAGAACTCATTTTCTGTTGAGGTTGTTGGGGTTTTTGCTTGGGATGGTGATCCAGGGTCTTCACACATCAAAAGGGCCAAGGCTGAGATGTCAACTATTTGTGTTTTGGACTATGAGAATGGGTTTAGTGCAACAGAAGTGCCCCAGTTTGGCGGAATTGATTTTGGCCAAGGGTTTTCAAGTGATGAAATGCATAAGTCTGGATTCATGTTATATGGGTTGGGGTCAATGAAGAATTTTGCTACTCCACATGAAGTTATTGCTGTCTCTTGGAATGTTAATTTGCTGGCAGCATATGTCAAGTCTGGATGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

119

Amino Acids

12.61

Weight (kDa)

4.93

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15102 FvH4_1g18481 FvH4_1g23805 FvH4_1g23806 FvH4_1g24581 FvH4_2g20031 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g22840 FvH4_3g23161 FvH4_3g29863 FvH4_3g30141 FvH4_3g31747 FvH4_4g00983 FvH4_4g08481 FvH4_4g08541 FvH4_4g14020 FvH4_4g35090 FvH4_4g35091 FvH4_6g33521 FvH4_6g37662 FvH4_6g39361 FvH4_6g39362 FvH4_7g11680 FvH4_7g14385 FvH4_7g27352 FvH4_7g27353 FvH4_7g28392
pyrus_communis	pycom07g27700
rosa_chinensis	RchiOBHm_Chr3g0481561 RchiOBHm_Chr5g0002281
rosa_laevigata	RLG00000010224 RLG00000028985
rosa_multiflora	Rmu_co8150836.1_g000001 Rmu_sc0001141.1_g000014 Rmu_sc0003002.1_g000038 Rmu_sc0010050.1_g000004 Rmu_sc0033439.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130360 Rroxscaffold_3G00239170 Rroxscaffold_3G00245770 Rroxscaffold_4G00314270 Rroxscaffold_5G00333350 Rroxscaffold_5G00382830
rosa_samantha	Rh1BG051600 Rh7BG317500 Rh7BG317600 Rh7CG294600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	114, 205
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	93
BmrI	ACTGGG	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	92, 117, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	92, 117, 208
BseGI	GGATG	2 cut(s)	88, 353
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	116, 207
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	116, 207
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	116, 207
BspCNI	CTCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	92, 117, 208
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	117, 208
Bst2UI	CCWGG	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	88, 353
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	116, 207
BtsCI	GGATG	2 cut(s)	88, 353
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	114
CviAII	CATG	2 cut(s)	247, 290
CviJI	RGCY	4 cut(s)	26, 116, 122, 207
CviKI_1	RGCY	4 cut(s)	26, 116, 122, 207
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	117, 208
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	117, 208
EcoT22I	ATGCAT	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	117, 208
FaeI	CATG	2 cut(s)	250, 293
FatI	CATG	2 cut(s)	246, 289
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	116, 207
Hin1II	CATG	2 cut(s)	250, 293
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	29, 243
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	240, 345
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	170, 232
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	250, 293
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	78, 105, 197, 225, 311, 330
Lsp1109I	GCAGC	1 cut(s)	341
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	90, 283
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	3 cut(s)	195, 274, 319
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	43, 52
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	250, 293
NsiI	ATGCAT	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	1 cut(s)	63
Sse9I	AATT	3 cut(s)	195, 274, 319
SsiI	CCGC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	117, 208
TasI	AATT	3 cut(s)	195, 274, 319
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	235, 240, 284, 306
TspRI	CASTG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.