Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

13508208 .. 13508594

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCAGCTCAGGTTCGACTAAAGGTTGTTAATATAGGATGCCCAGAGAAAGTGAGACTTGATAGTTTGGAAGATGCTACTAGAGGAAGCAAATGTAAAATTTGCGAAGAGAGCCTTGATCACTTTGAGGGTGTAAAAGAATGTATAACTCGCTTGCCCTGCACTCATCTCTTTCATGGAGATTGCATTGTCAAATGGTCAGTGACGAGTCAATTGTGTCCCATTCCCTGGTGCCTATTCCAAATGCCAACAATAGAGATGGAAGAGGTGGCTCAAACTGCTGAGCCGAGGAGGGTGAATTGGCCTGTGGTTCTCGCAGTGTCCACTGGTGGTATATTAGCTGCGATGCTGGCGTGCAGATTGTGGAAGCATAGTAGTTACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

129

Amino Acids

14.43

Weight (kDa)

7.55

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	31 - 75	9.4e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	2 cut(s)	8, 341
AluI	AGCT	2 cut(s)	8, 341
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	342
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	29, 64, 336
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	227, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	227, 287
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	23, 273
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	328
BsgI	GTGCAG	2 cut(s)	145, 376
BshFI	GGCC	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	22, 274
BspLI	GGNNCC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	227, 287
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	102, 258
BstC8I	GCNNGC	3 cut(s)	155, 351, 355
BstDEI	CTNAG	2 cut(s)	9, 282
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 159, 278, 350
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	3 cut(s)	207, 324, 324
Cac8I	GCNNGC	3 cut(s)	155, 351, 355
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	8, 114, 272, 286, 304, 341
CviKI_1	RGCY	6 cut(s)	8, 114, 272, 286, 304, 341
DdeI	CTNAG	2 cut(s)	9, 282
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	102, 258
EarI	CTCTTC	2 cut(s)	102, 258
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	179
FaiI	YATR	5 cut(s)	35, 146, 177, 335, 372
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 99, 131
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	324
Hpy8I	GTNNAC	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	162, 186, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 159, 278, 350
HpyF3I	CTNAG	2 cut(s)	9, 282
Hsp92II	CATG	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	57, 172, 214, 241, 312, 318, 335
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	3 cut(s)	29, 64, 336
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	202, 377
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	83, 119, 275
MfeI	CAATTG	1 cut(s)	212
MluCI	AATT	3 cut(s)	99, 212, 298
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	77, 121, 259, 282, 285
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	111, 159, 278, 350
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	233
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	5 cut(s)	10, 15, 27, 270, 343
SfaNI	GCATC	3 cut(s)	29, 64, 336
Sse9I	AATT	3 cut(s)	99, 212, 298
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	227
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	99, 212, 298
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	207, 324, 331
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	3 cut(s)	207, 324, 331
Van91I	CCANNNNNTGG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	99
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.