Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004956.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

33273 .. 33686

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004956.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgtccaccgagaacttgtttgttagcaatgtgtttcaaagaagagatgtatcccttgacttcccaagcaacaagcgtgtgatcagaatatcacaaaccaagatgactggaacctgctggggtaattcttccacagacgttacatatcatgatatattaactatagcggaccatgaagttattgtctcagtccctgacttcctgcttgtatccaaaaggcaagagcatacaaagaagatggctgaaattcttaccaaattgagggtcccagaatttgagcaaccacctatcattgataaaatatttatggcggttgaactggctgacaacccccactggcctattgcttgccataatggatatcaccttatttcatcaaacgatcagcatggcctatcagttagattgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

137

Amino Acids

15.7

Weight (kDa)

6.36

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AciI	CCGC	2 cut(s)	167, 311
AcsI	RAATTY	2 cut(s)	246, 272
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	38, 317
Alw26I	GTCTC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	338, 391
ApoI	RAATTY	2 cut(s)	246, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AspS9I	GGNCC	2 cut(s)	169, 265
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	169, 265
BccI	CCATC	1 cut(s)	232
BciVI	GTATCC	2 cut(s)	61, 220
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	2 cut(s)	61, 220
Bme18I	GGWCC	2 cut(s)	169, 265
BmgT120I	GGNCC	2 cut(s)	169, 265
BmiI	GGNNCC	3 cut(s)	112, 266, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	3 cut(s)	112, 324, 341
Bse3DI	GCAATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	112, 324, 341
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	2 cut(s)	340, 393
BslFI	GGGAC	2 cut(s)	176, 251
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	176, 251
BsnI	GGCC	2 cut(s)	340, 393
Bsp143I	GATC	2 cut(s)	81, 382
BspACI	CCGC	2 cut(s)	167, 311
BspANI	GGCC	2 cut(s)	340, 393
BspCNI	CTCAG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	112, 266, 267
BspMI	ACCTGC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	112, 324, 341
BssMI	GATC	2 cut(s)	81, 382
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	84, 385
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	81, 382
BstSFI	CTRYAG	1 cut(s)	162
BsuI	GTATCC	2 cut(s)	61, 220
BsuRI	GGCC	2 cut(s)	340, 393
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	169, 265
CviAII	CATG	3 cut(s)	149, 173, 389
CviJI	RGCY	4 cut(s)	242, 323, 340, 393
CviKI_1	RGCY	4 cut(s)	242, 323, 340, 393
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	2 cut(s)	83, 384
DpnII	GATC	2 cut(s)	81, 382
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	169, 265
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	362
FaeI	CATG	3 cut(s)	152, 176, 392
FaiI	YATR	9 cut(s)	145, 150, 155, 164, 174, 228, 308, 354, 390
FaqI	GGGAC	2 cut(s)	176, 251
FatI	CATG	3 cut(s)	148, 172, 388
FbaI	TGATCA	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	340, 393
Hin1II	CATG	3 cut(s)	152, 176, 392
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	152, 176, 392
KflI	GGGWCCC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 382
LpnPI	CCDG	8 cut(s)	93, 103, 127, 207, 215, 282, 305, 322
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	83, 384
MboI	GATC	2 cut(s)	81, 382
MboII	GAAGA	3 cut(s)	54, 120, 247
MluCI	AATT	4 cut(s)	124, 246, 257, 272
MnlI	CCTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	158
NdeII	GATC	2 cut(s)	81, 382
NlaIII	CATG	3 cut(s)	152, 176, 392
NlaIV	GGNNCC	3 cut(s)	112, 266, 267
PagI	TCATGA	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	3 cut(s)	112, 266, 267
PspPI	GGNCC	2 cut(s)	169, 265
PspPPI	RGGWCCY	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	81, 382
Sau96I	GGNCC	2 cut(s)	169, 265
SetI	ASST	4 cut(s)	116, 141, 289, 369
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	169, 265
Sse9I	AATT	4 cut(s)	124, 246, 257, 272
SsiI	CCGC	2 cut(s)	167, 311
SspI	AATATT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	141
TasI	AATT	4 cut(s)	124, 246, 257, 272
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	189, 363
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	169, 265
XapI	RAATTY	2 cut(s)	246, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.