Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484079.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

1662 .. 2237

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484079.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgagagtcccagaatttgagcaaccacctatcattgataaactatttacggcggttgaactggctgacaaccccgactggcctattattgcttgccacctaatggacgtcaccttatttcatcaaatgatcagtgataggtgcacggcctatcaattagagtgttttgagaaagtgagaattgatagtttggaagatattgttagacagcaacaatgtgtcatttgtaaggagagccttgatcactttgagggtttagatgaagggattgatcgtggtcagctgatgattattcgcttgtcctgctcacatctttatcacgaagattgcattgcccaatggcttgcgaatagtcagttctgtcccatatgccgatgctcaatgtcagttgtggaacaggcgatgctgcttgttgaacaggagatgccggttgtggaacaggtgatgtcagttgtggaacaggctattgaagcatcatggcggcatctgcattggcctattctgctcacagcatctgcgggtggtatattaactgctatgctggtgtgtagattattgaagcgaagccaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

191

Amino Acids

21.91

Weight (kDa)

4.82

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	103
AciI	CCGC	3 cut(s)	53, 481, 518
AcsI	RAATTY	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	59, 416, 470, 559
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	80, 147, 494
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	103, 454
BaeGI	GKGCMC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	393
BceAI	ACGGC	2 cut(s)	66, 162
BclI	TGATCA	2 cut(s)	129, 241
BisI	GCNGC	2 cut(s)	407, 482
BlsI	GCNGC	2 cut(s)	408, 483
BmsI	GCATC	6 cut(s)	365, 393, 414, 482, 493, 521
BsaHI	GRCGYC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	66, 83
Bse3DI	GCAATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	66, 83
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	393
BshFI	GGCC	3 cut(s)	82, 149, 496
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	82, 149, 496
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	129, 241, 271
BspACI	CCGC	3 cut(s)	53, 481, 518
BspANI	GGCC	3 cut(s)	82, 149, 496
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	66, 83
BssAI	RCCGGY	1 cut(s)	427
BssMI	GATC	3 cut(s)	129, 241, 271
BssNI	GRCGYC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	94, 345
BstKTI	GATC	3 cut(s)	132, 244, 274
BstMBI	GATC	3 cut(s)	129, 241, 271
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 470, 487, 502
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	82, 149, 496
BtgZI	GCGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	94, 345
CaiI	CAGNNNCTG	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	427
CviAII	CATG	1 cut(s)	477
CviJI	RGCY	9 cut(s)	65, 82, 149, 237, 283, 343, 464, 496, 567
CviKI_1	RGCY	9 cut(s)	65, 82, 149, 237, 283, 343, 464, 496, 567
DpnI	GATC	3 cut(s)	131, 243, 273
DpnII	GATC	3 cut(s)	129, 241, 271
FaeI	CATG	1 cut(s)	480
FaiI	YATR	5 cut(s)	368, 370, 478, 527, 539
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	476
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	2 cut(s)	129, 241
Fnu4HI	GCNGC	2 cut(s)	407, 482
Fsp4HI	GCNGC	2 cut(s)	407, 482
GluI	GCNGC	2 cut(s)	407, 482
HaeIII	GGCC	3 cut(s)	82, 149, 496
HapII	CCGG	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	480
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	103, 454
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	144, 330, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 470, 487, 502
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	480
Ksp22I	TGATCA	2 cut(s)	129, 241
Kzo9I	GATC	3 cut(s)	129, 241, 271
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	6 cut(s)	365, 393, 414, 482, 493, 521
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	131, 243, 273
MboI	GATC	3 cut(s)	129, 241, 271
MboII	GAAGA	2 cut(s)	206, 335
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	3 cut(s)	14, 155, 180
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	4 cut(s)	303, 470, 487, 502
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	3 cut(s)	129, 241, 271
NlaIII	CATG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	109
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	408, 483
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	2 cut(s)	407, 482
Sau3AI	GATC	3 cut(s)	129, 241, 271
SchI	GAGTC	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	7 cut(s)	31, 102, 111, 116, 143, 285, 444
SfaNI	GCATC	6 cut(s)	365, 393, 414, 482, 493, 521
Sse9I	AATT	3 cut(s)	14, 155, 180
SsiI	CCGC	3 cut(s)	53, 481, 518
TaiI	ACGT	1 cut(s)	111
TasI	AATT	3 cut(s)	14, 155, 180
TauI	GCSGC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	110, 276
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.