Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

9637718 .. 9640919

Gene Structure 3202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCCTTACAGACATTGCCTATCATGATATATGTCTTCCTGCTTTTATCTGTAAGGCAATATTATACAGAGAAGATGGCTGAAATTCTTACCAAATTGAAGGTCCCAGAATTTGAGCAACCACCTATCATTGACAAAATATTTATGGAGTGGCCTATTGCTTGCTTTATAAAGGATATCACCTTATTTCATCAGACGATCAACCTGGCCTATCAGTTAGAGAGTTTCGAGAAAGTGAGAATTGATTGTTTGGAAGATATTGTTAGACAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAAGGTGTAGAAGAAGGGATTGATCGTGGTCAGCTGATGATTATTCGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTTTCCAATGGCTGGCGCAGAGTCAGTTGTGTCCCTTGTGTCGACACTCAATGCCAGTTGTGGAGCAGGCGACGCGGGTTGTTGAACAGGCGATGCCGGTGGTGGAACATGCGATTCTGGTTCTTGAACAGGCGATGCCGGTTGTGGAACAGGCAGCTAAGCCATCGAAACCATCATGGTGGCATCTGCATTGGCCTATGCTGCTCACAGCATCTGCGGGTGGTATATTAACCGCTATACTGGTATGTAAATTATTGAAGCAAAGGCAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

221

Amino Acids

25.61

Weight (kDa)

5.75

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	91 - 145	4.3e-09	Ring finger domain
zf-rbx1	PF12678	92 - 145	1.5e-10	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	121 - 144	1.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	433
AccII	CGCG	1 cut(s)	466
AciI	CCGC	3 cut(s)	466, 608, 624
AcsI	RAATTY	2 cut(s)	84, 110
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	5 cut(s)	100, 311, 476, 518, 649
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	2 cut(s)	343, 548
AluI	AGCT	2 cut(s)	343, 548
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	3 cut(s)	152, 207, 584
ApeKI	GCWGC	2 cut(s)	545, 592
ApoI	RAATTY	2 cut(s)	84, 110
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	557, 579
BccI	CCATC	3 cut(s)	70, 562, 571
BciT130I	CCWGG	1 cut(s)	206
BclI	TGATCA	1 cut(s)	301
BisI	GCNGC	2 cut(s)	546, 593
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	2 cut(s)	547, 594
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	4 cut(s)	474, 516, 583, 611
BpiI	GAAGAC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	2 cut(s)	487, 529
Bse1I	ACTGG	2 cut(s)	446, 636
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	446, 636
BseXI	GCAGC	2 cut(s)	557, 579
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	3 cut(s)	154, 209, 586
BsiSI	CCGG	2 cut(s)	488, 530
BslFI	GGGAC	2 cut(s)	89, 408
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	89, 408
BsnI	GGCC	3 cut(s)	154, 209, 586
Bsp143I	GATC	3 cut(s)	198, 301, 331
Bsp1720I	GCTNAGC	1 cut(s)	549
BspACI	CCGC	3 cut(s)	466, 608, 624
BspANI	GGCC	3 cut(s)	154, 209, 586
BspFNI	CGCG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	487, 529
BsrI	ACTGG	2 cut(s)	446, 636
BssAI	RCCGGY	2 cut(s)	487, 529
BssMI	GATC	3 cut(s)	198, 301, 331
Bst2UI	CCWGG	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	163, 405, 459
BstDEI	CTNAG	1 cut(s)	549
BstFNI	CGCG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	201, 304, 334
BstMBI	GATC	3 cut(s)	198, 301, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 463, 592
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	557, 579
BstV2I	GAAGAC	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	570
BsuRI	GGCC	3 cut(s)	154, 209, 586
BtgZI	GCGATG	2 cut(s)	497, 539
Cac8I	GCNNGC	3 cut(s)	163, 405, 459
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	2 cut(s)	487, 529
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	472
CviAII	CATG	3 cut(s)	25, 500, 567
CviJI	RGCY	9 cut(s)	80, 154, 209, 297, 343, 403, 548, 553, 586
CviKI_1	RGCY	9 cut(s)	80, 154, 209, 297, 343, 403, 548, 553, 586
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	3 cut(s)	200, 303, 333
DpnII	GATC	3 cut(s)	198, 301, 331
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	178
FaeI	CATG	3 cut(s)	28, 503, 570
FaqI	GGGAC	2 cut(s)	89, 408
FatI	CATG	3 cut(s)	24, 499, 566
FauI	CCCGC	2 cut(s)	459, 601
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	546, 593
Fsp4HI	GCNGC	2 cut(s)	546, 593
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	2 cut(s)	546, 593
HaeIII	GGCC	3 cut(s)	154, 209, 586
HapII	CCGG	2 cut(s)	488, 530
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	3 cut(s)	28, 503, 570
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HinfI	GANTC	2 cut(s)	412, 505
HpaII	CCGG	2 cut(s)	488, 530
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	4 cut(s)	25, 229, 380, 515
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	3 cut(s)	94, 305, 317
HpyCH4V	TGCA	2 cut(s)	390, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 463, 592
HpyF3I	CTNAG	1 cut(s)	549
Hsp92II	CATG	3 cut(s)	28, 503, 570
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	198, 301, 331
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	2 cut(s)	557, 579
LweI	GCATC	4 cut(s)	474, 516, 583, 611
MalI	GATC	3 cut(s)	200, 303, 333
MboI	GATC	3 cut(s)	198, 301, 331
MboII	GAAGA	5 cut(s)	28, 85, 266, 332, 395
MluCI	AATT	5 cut(s)	84, 95, 110, 240, 641
MlyI	GAGTC	1 cut(s)	421
MseI	TTAA	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	568
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	2 cut(s)	488, 530
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	3 cut(s)	363, 463, 592
NdeII	GATC	3 cut(s)	198, 301, 331
NlaIII	CATG	3 cut(s)	28, 503, 570
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	503
PagI	TCATGA	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	505
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	547, 594
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PpuMI	RGGWCCY	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	568
SalI	GTCGAC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	2 cut(s)	546, 593
Sau3AI	GATC	3 cut(s)	198, 301, 331
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	7 cut(s)	105, 127, 185, 207, 316, 345, 550
SfaNI	GCATC	4 cut(s)	474, 516, 583, 611
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	568
Sse9I	AATT	5 cut(s)	84, 95, 110, 240, 641
SsiI	CCGC	3 cut(s)	466, 608, 624
SspI	AATATT	2 cut(s)	62, 141
StyD4I	CCNGG	1 cut(s)	204
TaqI	TCGA	3 cut(s)	228, 433, 557
TasI	AATT	5 cut(s)	84, 95, 110, 240, 641
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TseI	GCWGC	2 cut(s)	545, 592
TspDTI	ATGAA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	84, 110
XceI	RCATGY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.