Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

10325224 .. 10325808

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTGAAATTCTTACCGAATTGAGGGTCCCAGAATTTGAGCAACCACCTATTATTGATAAAATATTTATGGCGGTTGAATTGGCTGACAGCCCCGAGTGGCCTATCTTTTGCCTTATAAAGGATATCACCTTATTTCATCAAACGATCAACCTGGCCTATGAGGTAGAGAAAGTGAGAATTGATAGTTTGGAAGATACTGTTAGACAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGAGCACTTTGAGGGTGTAAAAGAAGGGATTGATCGTGATCAGTTGATAATTATTAGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTGTCCAATGGCTTGCGAAGAGTCAGTTGTGTCCCATATGCCGATACTCAATGCCAGTTGTGAAACAGATGATGCCAATTGTTGAACAGGCGATGCCTGTGGTGGAAGAGGCGATGCCAGTTGTGGAACAGGTAGCTGAGCCATCAAAAACATCATGGGGGCATCTGCATTGGCCTATGCTGCTCACAGCATCTGCGGGTGGTATGTTAACTGCTGTGCTGGTATTTAGATTATTGAAGCAACGCCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

194

Amino Acids

22.23

Weight (kDa)

4.95

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	71 - 125	3.2e-09	Ring finger domain
zf-rbx1	PF12678	72 - 125	1.3e-10	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	73 - 129	7.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4	PF00097	73 - 124	8.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	100 - 124	9.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AciI	CCGC	2 cut(s)	74, 527
AcsI	RAATTY	2 cut(s)	9, 35
AfiI	CCNNNNNNNGG	2 cut(s)	24, 121
AgsI	TTSAA	3 cut(s)	80, 416, 568
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	297, 467
AluI	AGCT	2 cut(s)	297, 467
Alw21I	GWGCWC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	101, 156, 503
ApeKI	GCWGC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	9, 35
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	277
BisI	GCNGC	1 cut(s)	512
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	29, 30
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	5 cut(s)	393, 414, 435, 502, 530
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 121
Bse1I	ACTGG	2 cut(s)	386, 449
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	24, 121
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	2 cut(s)	386, 449
BseXI	GCAGC	1 cut(s)	498
BshFI	GGCC	3 cut(s)	103, 158, 505
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	14, 348
BslI	CCNNNNNNNGG	2 cut(s)	24, 121
BsmFI	GGGAC	2 cut(s)	14, 348
BsnI	GGCC	3 cut(s)	103, 158, 505
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	147, 271, 277
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	2 cut(s)	74, 527
BspANI	GGCC	3 cut(s)	103, 158, 505
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	29, 30
BsrI	ACTGG	2 cut(s)	386, 449
BssMI	GATC	3 cut(s)	147, 271, 277
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	344, 432
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	468
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	150, 274, 280
BstMBI	GATC	3 cut(s)	147, 271, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 511
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	103, 158, 505
BtgZI	GCGATG	2 cut(s)	437, 458
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	149, 273, 279
DpnII	GATC	3 cut(s)	147, 271, 277
Eam1104I	CTCTTC	2 cut(s)	344, 432
EarI	CTCTTC	2 cut(s)	344, 432
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	1 cut(s)	489
FaiI	YATR	8 cut(s)	71, 119, 162, 368, 370, 487, 509, 536
FaqI	GGGAC	2 cut(s)	14, 348
FatI	CATG	1 cut(s)	485
FauI	CCCGC	1 cut(s)	520
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	103, 158, 505
Hin1II	CATG	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	1 cut(s)	352
HpaI	GTTAAC	1 cut(s)	540
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188III	TCNNGA	2 cut(s)	275, 320
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	330, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 511
HpyF3I	CTNAG	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	489
KflI	GGGWCCC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	147, 271, 277
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	5 cut(s)	393, 414, 435, 502, 530
MalI	GATC	3 cut(s)	149, 273, 279
MboI	GATC	3 cut(s)	147, 271, 277
MboII	GAAGA	4 cut(s)	206, 335, 361, 449
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	7 cut(s)	9, 20, 35, 80, 180, 288, 408
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	4 cut(s)	18, 157, 244, 433
MseI	TTAA	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	303, 511
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	3 cut(s)	147, 271, 277
NlaIII	CATG	1 cut(s)	489
NlaIV	GGNNCC	2 cut(s)	29, 30
PkrI	GCNGC	1 cut(s)	513
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	29, 30
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	3 cut(s)	147, 271, 277
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	52, 134, 156, 168, 299, 465, 469
SfaNI	GCATC	5 cut(s)	393, 414, 435, 502, 530
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	7 cut(s)	9, 20, 35, 80, 180, 288, 408
SsiI	CCGC	2 cut(s)	74, 527
SspI	AATATT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	7 cut(s)	9, 20, 35, 80, 180, 288, 408
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TseI	GCWGC	1 cut(s)	511
TspDTI	ATGAA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	119
XapI	RAATTY	2 cut(s)	9, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.