Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003634.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

19263 .. 19856

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003634.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgtatacaaaggagttcgctgaaattctaaccaaaatgagggtccctagatttgagcaaccacctatcattgataaactatttttgggggttgaactggctgacaacctcgagttgcctattgcttgcttcgtaatggatgtcaccgtatttcatcgtccgcatacccttcaattagattgtttcgagaaagtgagaattgatacattggaagatattgatagacaggaacagtgtgtcatttgtaaggaaagccttgatcgctttgaggatgcagaagaagggattgatcagggtcatcggatgattattcgcttgccctgctcacatctttatcacgaagattgcatttttcaatggctggtgatgactcctttatgtcccatgtgccgacacttagtgccagttgtggaagaggtaatgccagatgtggaacaggcaatgccaattgtggaacgggctatggaagaggcagtggagccatcggaaccatcatggcggaagctgcattggcctacgctgctcacagcgtctgcgggtggtatatttactgctttgctagtatgtagattattgaagcaaaggcaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

197

Amino Acids

22.93

Weight (kDa)

4.94

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	161, 499, 536
AcsI	RAATTY	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	95, 173, 356, 577
AluBI	AGCT	1 cut(s)	505
AluI	AGCT	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	505, 520
ApoI	RAATTY	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	136, 376
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	492, 507
BccI	CCATC	2 cut(s)	490, 499
BclI	TGATCA	1 cut(s)	289
BfaI	CTAG	2 cut(s)	48, 560
BisI	GCNGC	2 cut(s)	506, 521
BlsI	GCNGC	2 cut(s)	507, 522
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	4 cut(s)	44, 45, 480, 489
BmsI	GCATC	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	102, 404
Bse3DI	GCAATG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	145, 277, 309
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	102, 404
BseXI	GCAGC	2 cut(s)	492, 507
BshFI	GGCC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	29, 366
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	29, 366
BsnI	GGCC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	259, 289
BspACI	CCGC	3 cut(s)	161, 499, 536
BspANI	GGCC	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	44, 45, 480, 489
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	102, 404
BssMI	GATC	2 cut(s)	259, 289
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	148, 234
Bst6I	CTCTTC	2 cut(s)	408, 462
BstC8I	GCNNGC	2 cut(s)	127, 317
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	145, 277, 309
BstKTI	GATC	2 cut(s)	262, 292
BstMBI	GATC	2 cut(s)	259, 289
BstMWI	GCNNNNNNNGC	5 cut(s)	261, 321, 505, 511, 520
BstV1I	GCAGC	2 cut(s)	492, 507
BstZ17I	GTATAC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	145, 277, 309
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	239, 480
Cac8I	GCNNGC	2 cut(s)	127, 317
CaiI	CAGNNNCTG	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	519
CviAII	CATG	2 cut(s)	385, 495
CviJI	RGCY	7 cut(s)	101, 255, 361, 461, 481, 505, 514
CviKI_1	RGCY	7 cut(s)	101, 255, 361, 461, 481, 505, 514
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	2 cut(s)	261, 291
DpnII	GATC	2 cut(s)	259, 289
DraIII	CACNNNGTG	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	408, 462
EarI	CTCTTC	2 cut(s)	408, 462
EciI	GGCGGA	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	43
FaeI	CATG	2 cut(s)	388, 498
FaiI	YATR	8 cut(s)	6, 165, 379, 386, 464, 496, 545, 565
FaqI	GGGAC	2 cut(s)	29, 366
FatI	CATG	2 cut(s)	384, 494
FauI	CCCGC	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	506, 521
FokI	GGATG	3 cut(s)	152, 284, 316
Fsp4HI	GCNGC	2 cut(s)	506, 521
FspBI	CTAG	2 cut(s)	48, 560
GluI	GCNGC	2 cut(s)	506, 521
HaeIII	GGCC	1 cut(s)	514
HgaI	GACGC	1 cut(s)	519
Hin1II	CATG	2 cut(s)	388, 498
HinfI	GANTC	1 cut(s)	370
HphI	GGTGA	2 cut(s)	136, 376
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	303, 487
Hpy188III	TCNNGA	2 cut(s)	187, 338
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	179, 275
HpyCH4III	ACNGT	2 cut(s)	148, 234
HpyCH4V	TGCA	3 cut(s)	275, 348, 508
HpyF10VI	GCNNNNNNNGC	5 cut(s)	261, 321, 505, 511, 520
HpyF3I	CTNAG	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	388, 498
KflI	GGGWCCC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	259, 289
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	8 cut(s)	83, 212, 278, 334, 347, 417, 422, 438
Lsp1109I	GCAGC	2 cut(s)	492, 507
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	48, 560
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	261, 291
MboI	GATC	2 cut(s)	259, 289
MboII	GAAGA	5 cut(s)	224, 290, 353, 425, 479
MfeI	CAATTG	1 cut(s)	447
MluCI	AATT	4 cut(s)	24, 173, 198, 447
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	5 cut(s)	33, 119, 262, 409, 463
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	5 cut(s)	261, 321, 505, 511, 520
NdeII	GATC	2 cut(s)	259, 289
NlaIII	CATG	2 cut(s)	388, 498
NlaIV	GGNNCC	4 cut(s)	44, 45, 480, 489
NmuCI	GTSAC	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	507, 522
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
PspN4I	GGNNCC	4 cut(s)	44, 45, 480, 489
PspPI	GGNCC	1 cut(s)	43
PspPPI	RGGWCCY	1 cut(s)	43
PspXI	VCTCGAGB	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	533
SatI	GCNGC	2 cut(s)	506, 521
Sau3AI	GATC	2 cut(s)	259, 289
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	364
SetI	ASST	4 cut(s)	67, 111, 420, 507
SfaNI	GCATC	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	24, 173, 198, 447
SsiI	CCGC	3 cut(s)	161, 499, 536
SspMI	CTAG	2 cut(s)	48, 560
TaaI	ACNGT	2 cut(s)	148, 234
TaqI	TCGA	2 cut(s)	111, 186
TasI	AATT	4 cut(s)	24, 173, 198, 447
TscAI	CASTG	2 cut(s)	239, 480
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	505, 520
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	2 cut(s)	239, 480
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	48, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.