Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455033.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

1142 .. 1732

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455033.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggctgaaattcttaccaaattgaaggtcccagaatttgagcaaccacctatcattgacaaaatatttatggagtggcctattgcttgctttataaaggatatcaccttatttcatcagacgatcaacctggcctatcagttagagagtttcgagaaagtgagaattgattgtttggaagatattgttagacagcaacaatgtgtcatttgtaaggagagccttgatcactttgaaggtgtagaagaagggattgatcgtggtcagctgatgattattcgcttgtcctgctcacatctttatcacgaagattgcattttccaatggctggcgcagagtcagttgtgtcccttgtgtcgacactcaatgccagttgtggagcaggcgacgcgggttgttgaacaggcgatgccggtggtggaacatgcgattctggttcttgaacaggcgatgccggttgtggaacaggcagctaagccatcgaaaccatcatggtggcatctgcattggcctatgctgctcacagcatctgcgggtggtatattaaccgctatgctggtatgtaaattattgaagcaaaggcaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

196

Amino Acids

22.59

Weight (kDa)

5.59

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	391
AciI	CCGC	3 cut(s)	391, 533, 549
AcsI	RAATTY	2 cut(s)	9, 35
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	25, 236, 401, 443, 574
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	268, 473
AluI	AGCT	2 cut(s)	268, 473
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	3 cut(s)	77, 132, 509
ApeKI	GCWGC	2 cut(s)	470, 517
ApoI	RAATTY	2 cut(s)	9, 35
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	482, 504
BccI	CCATC	2 cut(s)	487, 496
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	226
BisI	GCNGC	2 cut(s)	471, 518
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	2 cut(s)	472, 519
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	4 cut(s)	399, 441, 508, 536
Bpu1102I	GCTNAGC	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	2 cut(s)	412, 454
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	482, 504
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	3 cut(s)	79, 134, 511
BsiSI	CCGG	2 cut(s)	413, 455
BslFI	GGGAC	2 cut(s)	14, 333
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	14, 333
BsnI	GGCC	3 cut(s)	79, 134, 511
Bsp143I	GATC	3 cut(s)	123, 226, 256
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	3 cut(s)	391, 533, 549
BspANI	GGCC	3 cut(s)	79, 134, 511
BspFNI	CGCG	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	30
BsrFI	RCCGGY	2 cut(s)	412, 454
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	2 cut(s)	412, 454
BssMI	GATC	3 cut(s)	123, 226, 256
Bst2UI	CCWGG	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	88, 330, 384
BstDEI	CTNAG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	126, 229, 259
BstMBI	GATC	3 cut(s)	123, 226, 256
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 388, 517
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	482, 504
BstXI	CCANNNNNNTGG	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	79, 134, 511
BtgZI	GCGATG	2 cut(s)	422, 464
Cac8I	GCNNGC	3 cut(s)	88, 330, 384
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	2 cut(s)	412, 454
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	397
CviAII	CATG	2 cut(s)	425, 492
CviJI	RGCY	9 cut(s)	5, 79, 134, 222, 268, 328, 473, 478, 511
CviKI_1	RGCY	9 cut(s)	5, 79, 134, 222, 268, 328, 473, 478, 511
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	3 cut(s)	125, 228, 258
DpnII	GATC	3 cut(s)	123, 226, 256
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	2 cut(s)	428, 495
FaiI	YATR	8 cut(s)	71, 95, 426, 493, 515, 542, 554, 562
FaqI	GGGAC	2 cut(s)	14, 333
FatI	CATG	2 cut(s)	424, 491
FauI	CCCGC	2 cut(s)	384, 526
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	471, 518
Fsp4HI	GCNGC	2 cut(s)	471, 518
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	471, 518
HaeIII	GGCC	3 cut(s)	79, 134, 511
HapII	CCGG	2 cut(s)	413, 455
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	2 cut(s)	428, 495
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	337, 430
HpaII	CCGG	2 cut(s)	413, 455
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	154, 305, 440
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	3 cut(s)	19, 230, 242
HpyCH4V	TGCA	2 cut(s)	315, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 388, 517
HpyF3I	CTNAG	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	428, 495
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	123, 226, 256
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	482, 504
LweI	GCATC	4 cut(s)	399, 441, 508, 536
MalI	GATC	3 cut(s)	125, 228, 258
MboI	GATC	3 cut(s)	123, 226, 256
MboII	GAAGA	3 cut(s)	191, 257, 320
MluCI	AATT	5 cut(s)	9, 20, 35, 165, 566
MlyI	GAGTC	1 cut(s)	346
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	493
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	2 cut(s)	413, 455
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	3 cut(s)	288, 388, 517
NdeII	GATC	3 cut(s)	123, 226, 256
NlaIII	CATG	2 cut(s)	428, 495
NlaIV	GGNNCC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	472, 519
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PpuMI	RGGWCCY	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	493
SalI	GTCGAC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	2 cut(s)	471, 518
Sau3AI	GATC	3 cut(s)	123, 226, 256
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	7 cut(s)	30, 52, 110, 132, 241, 270, 475
SfaNI	GCATC	4 cut(s)	399, 441, 508, 536
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	493
Sse9I	AATT	5 cut(s)	9, 20, 35, 165, 566
SsiI	CCGC	3 cut(s)	391, 533, 549
SspI	AATATT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	3 cut(s)	153, 358, 482
TasI	AATT	5 cut(s)	9, 20, 35, 165, 566
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TseI	GCWGC	2 cut(s)	470, 517
TspDTI	ATGAA	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	9, 35
XceI	RCATGY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.