Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

7938249 .. 7939244

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG102100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTCTCTCTGACCAAATCTGCTGCAATTGCTCCATTTCTAGTCTATTTGAACAAGTACATCAGTGCTCCATTAGAGGACACTCATTTGCATCAGATTAGGGTTACAACTGACATATATTTTGTGGTCTCTCGCTCCCATTTCGTGCTACCGTCCAAAAGGGATCTGTGTACAAAGATTCTGGCTGAGTATCTTTCCGATAAATTGAGTAGTGTCCCAGAAGTTGAGCAGCCGACTGTCATTCATCAAATTTTTCGGGCAGTTGAACTGGCTGACATCCCTGGGGTGCCTGTTACTGGCATCTTAATCGATGCGACTATCCGCTTATATGACAATGATGAGACTATTGTGGAGTGGATTGCACCAGATTCGTTACAAAGATTTTTGCCTGGGCTTATGCCTGCAACCAAGTCATCCATTGAAGGTTTGGAGAAAGTGAGACTTGAGAGTTTGGAAGCTACTGTTAGACTGACGCAGTGTGTTATTTGTAAAGAGGGACTTGATCACTTTGATGATGATGTGGAAGAAGGCCTTGTTACTCGCTTGCCGTGCTCGCACCTTTATCATGGAGATTGCGTTGTCCAGTGGCTCGAGACGAGCAACTTGTGTCCATTGTGCCGGTACCCAATGCCAGTTATGGAAGAGGAAGAGGAGCCATCGAAACCCTCAGGAGCGCGACTGAGTTGGCCTGTGCTGCTTACAGTGTCTGCTGGTGGTATAATAGCTGCCGTGCTGCTTTGCAGACTGTTGAAGCGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

253

Amino Acids

28.27

Weight (kDa)

5.1

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	159 - 207	3.9e-12	Ring finger domain
zf-rbx1	PF12678	160 - 207	1.3e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	160 - 206	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	160 - 206	7.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	2 cut(s)	286, 621
AccII	CGCG	1 cut(s)	676
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	3 cut(s)	59, 172, 623
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	52, 266, 422, 751
AjnI	CCWGG	2 cut(s)	280, 388
AluBI	AGCT	2 cut(s)	458, 725
AluI	AGCT	2 cut(s)	458, 725
Alw21I	GWGCWC	2 cut(s)	70, 554
Alw26I	GTCTC	4 cut(s)	133, 335, 433, 587
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	529, 686
ApeKI	GCWGC	5 cut(s)	23, 229, 694, 725, 733
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp718I	GGTACC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	676
AvaI	CYCGRG	1 cut(s)	590
AxyI	CCTNAGG	1 cut(s)	667
BanI	GGYRCC	2 cut(s)	286, 621
Bbv12I	GWGCWC	2 cut(s)	70, 554
BbvI	GCAGC	5 cut(s)	10, 241, 681, 712, 720
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	2 cut(s)	532, 713
BcgI	CGANNNNNNTGC	4 cut(s)	289, 323, 351, 385
BciT130I	CCWGG	2 cut(s)	282, 390
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	4 cut(s)	133, 335, 433, 587
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	5 cut(s)	24, 230, 695, 726, 734
BlsI	GCNGC	5 cut(s)	25, 231, 696, 727, 735
Bme1390I	CCNGG	2 cut(s)	282, 390
BmeT110I	CYCGRG	1 cut(s)	590
BmiI	GGNNCC	3 cut(s)	288, 623, 654
BmrFI	CCNGG	2 cut(s)	282, 390
BmsI	GCATC	3 cut(s)	100, 301, 309
BpuEI	CTTGAG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	280, 281, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	4 cut(s)	273, 301, 583, 632
Bse21I	CCTNAGG	1 cut(s)	667
BseBI	CCWGG	2 cut(s)	282, 390
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	280, 281, 389
BseGI	GGATG	2 cut(s)	276, 413
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	177, 671, 681
BseNI	ACTGG	4 cut(s)	273, 301, 583, 632
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	5 cut(s)	10, 241, 681, 712, 720
Bsh1236I	CGCG	1 cut(s)	676
BshFI	GGCC	2 cut(s)	531, 688
BshNI	GGYRCC	2 cut(s)	286, 621
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	70, 554
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	2 cut(s)	200, 510
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	4 cut(s)	133, 335, 433, 587
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	2 cut(s)	200, 510
BsnI	GGCC	2 cut(s)	531, 688
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	70, 554
Bsp1407I	TGTACA	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	163, 502
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	2 cut(s)	531, 688
BspCNI	CTCAG	3 cut(s)	178, 672, 680
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	288, 623, 654
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	286, 621
BspTNI	GGTCTC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	618
BsrGI	TGTACA	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	273, 301, 583, 632
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	280, 281, 389
BssMI	GATC	2 cut(s)	163, 502
Bst2UI	CCWGG	2 cut(s)	282, 390
Bst4CI	ACNGT	5 cut(s)	153, 238, 463, 703, 747
Bst6I	CTCTTC	2 cut(s)	636, 642
BstAUI	TGTACA	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	402, 545, 554
BstDEI	CTNAG	3 cut(s)	186, 667, 680
BstF5I	GGATG	2 cut(s)	276, 413
BstFNI	CGCG	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	2 cut(s)	166, 505
BstMAI	GTCTC	4 cut(s)	133, 335, 433, 587
BstMBI	GATC	2 cut(s)	163, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 549, 553, 694
BstNI	CCWGG	2 cut(s)	282, 390
BstSCI	CCNGG	2 cut(s)	280, 388
BstUI	CGCG	1 cut(s)	676
BstV1I	GCAGC	5 cut(s)	10, 241, 681, 712, 720
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	309
Bsu36I	CCTNAGG	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	531, 688
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	276, 413
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	4 cut(s)	70, 482, 590, 708
Cac8I	GCNNGC	3 cut(s)	402, 545, 554
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	618
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	58, 171, 622
CviAII	CATG	1 cut(s)	566
CviQI	GTAC	3 cut(s)	58, 171, 622
DdeI	CTNAG	3 cut(s)	186, 667, 680
DpnI	GATC	2 cut(s)	165, 504
DpnII	GATC	2 cut(s)	163, 502
Eam1104I	CTCTTC	2 cut(s)	636, 642
EarI	CTCTTC	2 cut(s)	636, 642
Eco147I	AGGCCT	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	667
Eco88I	CYCGRG	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	280, 388
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	1 cut(s)	569
FaiI	YATR	8 cut(s)	116, 118, 328, 330, 398, 567, 638, 719
FalI	AAGNNNNNCTT	6 cut(s)	426, 458, 483, 515, 516, 548
FaqI	GGGAC	2 cut(s)	200, 510
FatI	CATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	5 cut(s)	24, 230, 695, 726, 734
FokI	GGATG	2 cut(s)	263, 400
Fsp4HI	GCNGC	5 cut(s)	24, 230, 695, 726, 734
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	5 cut(s)	24, 230, 695, 726, 734
HaeIII	GGCC	2 cut(s)	531, 688
HapII	CCGG	1 cut(s)	619
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HinfI	GANTC	2 cut(s)	178, 368
HpaII	CCGG	1 cut(s)	619
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	3 cut(s)	12, 96, 199
Hpy188III	TCNNGA	2 cut(s)	592, 669
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	416, 521
HpyCH4III	ACNGT	5 cut(s)	153, 238, 463, 703, 747
HpyCH4V	TGCA	5 cut(s)	26, 91, 362, 404, 741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 549, 553, 694
HpyF3I	CTNAG	3 cut(s)	186, 667, 680
Hsp92II	CATG	1 cut(s)	569
HspAI	GCGC	1 cut(s)	674
KpnI	GGTACC	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	163, 502
LmnI	GCTCC	5 cut(s)	37, 73, 140, 652, 671
Lsp1109I	GCAGC	5 cut(s)	10, 241, 681, 712, 720
LweI	GCATC	3 cut(s)	100, 301, 309
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	103, 292, 372, 535
MalI	GATC	2 cut(s)	165, 504
MboI	GATC	2 cut(s)	163, 502
MboII	GAAGA	3 cut(s)	536, 653, 659
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	70, 554
MluCI	AATT	3 cut(s)	27, 203, 249
MnlI	CCTC	5 cut(s)	70, 487, 637, 643, 676
MseI	TTAA	2 cut(s)	305, 760
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	2 cut(s)	282, 390
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	282, 390
MvnI	CGCG	1 cut(s)	676
MwoI	GCNNNNNNNGC	4 cut(s)	29, 549, 553, 694
NdeII	GATC	2 cut(s)	163, 502
NlaIII	CATG	1 cut(s)	569
NlaIV	GGNNCC	3 cut(s)	288, 623, 654
PaeR7I	CTCGAG	1 cut(s)	590
PasI	CCCWGGG	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	178, 368
PkrI	GCNGC	5 cut(s)	25, 231, 696, 727, 735
Psp6I	CCWGG	2 cut(s)	280, 388
PspGI	CCWGG	2 cut(s)	280, 388
PspN4I	GGNNCC	3 cut(s)	288, 623, 654
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	59, 172, 623
RsaNI	GTAC	3 cut(s)	58, 171, 622
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	305, 760
SatI	GCNGC	5 cut(s)	24, 230, 695, 726, 734
Sau3AI	GATC	2 cut(s)	163, 502
ScrFI	CCNGG	2 cut(s)	282, 390
SduI	GDGCHC	2 cut(s)	70, 554
SetI	ASST	4 cut(s)	427, 460, 561, 727
SfaNI	GCATC	3 cut(s)	100, 301, 309
Sfr274I	CTCGAG	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	443, 590
SmoI	CTYRAG	2 cut(s)	443, 590
Sse9I	AATT	3 cut(s)	27, 203, 249
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	41
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	280, 388
TaaI	ACNGT	5 cut(s)	153, 238, 463, 703, 747
TaqI	TCGA	3 cut(s)	309, 591, 659
TasI	AATT	3 cut(s)	27, 203, 249
TatI	WGTACW	2 cut(s)	57, 170
TfiI	GAWTC	2 cut(s)	178, 368
Tru1I	TTAA	2 cut(s)	305, 760
Tru9I	TTAA	2 cut(s)	305, 760
TscAI	CASTG	4 cut(s)	70, 482, 590, 708
TseI	GCWGC	5 cut(s)	23, 229, 694, 725, 733
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	4 cut(s)	70, 482, 590, 708
XapI	RAATTY	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	590
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.