Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

9429833 .. 9441386

Gene Structure 11554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATGACGGGAACCTACTGGGGTGATGCTACTACAGACGTTGCCATTCATCATATATGTACTCTAGGGGACGAAGAAATTGTTGTCGGACTCCCTGAATTCCTATCCGAAAGGCAAAAGTATACAGAGAAGCTGGCTAAAGTTCTTACTGAAATGAGAGTCCCAGAATTTGAGCAACGACCTATCATTGATAAAGTATTTACGGCGGTTGAACTGGCTGACAACCCCGACTGGCCTATTATTGCTTGCTACATAATGGATGTCACCTTATTTCATCAACTGATCAGTGATACGTGCACGGCCTATCAATTAGAGTGTTTTGAGAAAATGAGAATTGATAGTTTGGAAGATATTGTTAGACCGCAACAATGTGTCATTTGTAAGGAGAACCTTGATCACTTTGAGGGTTTAGAAGAAGGGATTGATCGTGGTCAGCTAATGATTATTCGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTGCCCAATGGCTTGCGAATAGTCAGTTCTGTCCCATATGCCGATGCTCAATGTCAGTTGTGGAACAGGCGATGCCGGTTGTTGAACAGGAGATGCCGGTTGTGGAACAGGTGATGTCAGTTGTGGAACAGGCGATTGAACCATCATGGCGGCATCTACATTGGCCTATGCTGCACACAGCATCTGCGGGTGGTATATTAACTGCTATGCTGGTCGAGACTAAGCTGCTGGCCAGTAGGAATACAGCGGAGAATAGAACTCTCCCAGCTTTTAATTTGCTACAAGCCTCCAAGGGTTATTTGACTTATTTCCTCCATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

268

Amino Acids

30.58

Weight (kDa)

4.81

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 176	1.6e-09	Ring finger domain
zf-rbx1	PF12678	123 - 176	1.3e-09	RING-H2 zinc finger domain
zf-C3HC4	PF00097	124 - 175	5.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	152 - 175	5.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	5 cut(s)	206, 362, 634, 671, 731
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	2 cut(s)	98, 167
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	212, 569, 623
AluBI	AGCT	4 cut(s)	133, 436, 709, 752
AluI	AGCT	4 cut(s)	133, 436, 709, 752
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	695
Alw44I	GTGCAC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	4 cut(s)	233, 300, 647, 714
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	655, 709
ApoI	RAATTY	2 cut(s)	98, 167
AsuHPI	GGTGA	3 cut(s)	35, 256, 607
BaeGI	GKGCMC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	642, 696
BccI	CCATC	1 cut(s)	634
BceAI	ACGGC	2 cut(s)	219, 315
BclI	TGATCA	2 cut(s)	282, 394
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	3 cut(s)	635, 656, 710
BlsI	GCNGC	3 cut(s)	636, 657, 711
BmiI	GGNNCC	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	6 cut(s)	16, 518, 546, 567, 646, 674
BmuI	ACTGGG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	774
Bse118I	RCCGGY	2 cut(s)	559, 580
Bse1I	ACTGG	4 cut(s)	23, 219, 236, 717
Bse3DI	GCAATG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	483
BseNI	ACTGG	4 cut(s)	23, 219, 236, 717
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	642, 696
BseYI	CCCAGC	1 cut(s)	748
BsgI	GTGCAG	1 cut(s)	641
BshFI	GGCC	4 cut(s)	235, 302, 649, 716
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	560, 581
BslFI	GGGAC	3 cut(s)	83, 146, 501
BsmAI	GTCTC	1 cut(s)	695
BsmFI	GGGAC	3 cut(s)	83, 146, 501
BsnI	GGCC	4 cut(s)	235, 302, 649, 716
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	282, 394, 424
BspACI	CCGC	5 cut(s)	206, 362, 634, 671, 731
BspANI	GGCC	4 cut(s)	235, 302, 649, 716
BspLI	GGNNCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	2 cut(s)	559, 580
BsrI	ACTGG	4 cut(s)	23, 219, 236, 717
BssAI	RCCGGY	2 cut(s)	559, 580
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	3 cut(s)	282, 394, 424
BssNAI	GTATAC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	774
Bst1107I	GTATAC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	4 cut(s)	135, 247, 498, 714
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	285, 397, 427
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	3 cut(s)	282, 394, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	456, 655
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	642, 696
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	235, 302, 649, 716
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	135, 247, 498, 714
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr10I	RCCGGY	2 cut(s)	559, 580
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	630
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	3 cut(s)	284, 396, 426
DpnII	GATC	3 cut(s)	282, 394, 424
EaeI	YGGCCR	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	774
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	1 cut(s)	633
FaqI	GGGAC	3 cut(s)	83, 146, 501
FatI	CATG	1 cut(s)	629
FauI	CCCGC	1 cut(s)	664
FauNDI	CATATG	1 cut(s)	521
FbaI	TGATCA	2 cut(s)	282, 394
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	635, 656, 710
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	635, 656, 710
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	3 cut(s)	635, 656, 710
GsaI	CCCAGC	1 cut(s)	752
HaeIII	GGCC	4 cut(s)	235, 302, 649, 716
HapII	CCGG	2 cut(s)	560, 581
Hin1II	CATG	1 cut(s)	633
HinfI	GANTC	2 cut(s)	90, 159
HpaII	CCGG	2 cut(s)	560, 581
HphI	GGTGA	3 cut(s)	35, 256, 607
Hpy166II	GTNNAC	2 cut(s)	123, 297
Hpy188I	TCNGA	2 cut(s)	89, 109
Hpy188III	TCNNGA	3 cut(s)	473, 700, 804
Hpy8I	GTNNAC	2 cut(s)	123, 297
HpyAV	CCTTC	1 cut(s)	410
HpyCH4IV	ACGT	2 cut(s)	39, 293
HpyCH4V	TGCA	3 cut(s)	297, 483, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	456, 655
HpyF3I	CTNAG	1 cut(s)	705
HpySE526I	ACGT	2 cut(s)	39, 293
Hsp92II	CATG	1 cut(s)	633
Ksp22I	TGATCA	2 cut(s)	282, 394
Kzo9I	GATC	3 cut(s)	282, 394, 424
Lsp1109I	GCAGC	2 cut(s)	642, 696
LweI	GCATC	6 cut(s)	16, 518, 546, 567, 646, 674
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	2 cut(s)	39, 293
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	284, 396, 426
MboI	GATC	3 cut(s)	282, 394, 424
MboII	GAAGA	4 cut(s)	86, 359, 425, 488
MhlI	GDGCHC	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	6 cut(s)	78, 98, 167, 308, 333, 757
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	2 cut(s)	84, 168
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	397, 781, 806
Mox20I	TGGCCA	1 cut(s)	716
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	2 cut(s)	683, 756
Msp20I	TGGCCA	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	2 cut(s)	560, 581
MwoI	GCNNNNNNNGC	2 cut(s)	456, 655
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	3 cut(s)	282, 394, 424
NlaIII	CATG	1 cut(s)	633
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	636, 657, 711
PleI	GAGTC	2 cut(s)	84, 167
PpsI	GAGTC	2 cut(s)	84, 167
Ppu21I	YACGTR	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	683, 756
SatI	GCNGC	3 cut(s)	635, 656, 710
Sau3AI	GATC	3 cut(s)	282, 394, 424
SchI	GAGTC	2 cut(s)	84, 168
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	6 cut(s)	16, 518, 546, 567, 646, 674
SfcI	CTRYAG	1 cut(s)	33
Sse9I	AATT	6 cut(s)	78, 98, 167, 308, 333, 757
SsiI	CCGC	5 cut(s)	206, 362, 634, 671, 731
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	774
TaiI	ACGT	2 cut(s)	42, 296
TaqI	TCGA	1 cut(s)	699
TasI	AATT	6 cut(s)	78, 98, 167, 308, 333, 757
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	637
Tru1I	TTAA	2 cut(s)	683, 756
Tru9I	TTAA	2 cut(s)	683, 756
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	655, 709
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	38, 263
TspRI	CASTG	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	98, 167
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.