Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

8645216 .. 8645671

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16906

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATGCGACTATCCGCTTATATGACAATGATGAGACTATTGTGGAGTGGATTGCACCAGATTCGTTACAAAGATTTTTGCCTGGGCTTATGCCTGCAACCAAGTCATCCATTGAAGGTTTGGAGAAAGTGAGACTTGAGAGTTTGGAAGCTACTGTTAGACTGACGCATTGTGTTATTTGTAAAGAGGGACTTGATCACTTTGATGATGATGTGGAAGAAGGCCTTGTTACTCGCTTGCCGTGCTCGCACCTTTATCATGGAGATTGCATTGTCCAGTGGCTCGAGACGAGCAACTTGTGTCCATTGTGCCGGTACCCAATGCCAGTTATGGAAGAGGAAGAGCAGCCATCGAAACCCTCAGGAGCGCGACTGAGTTGGCCTGTGCTGCTTACAGTGTCTGCTGGTGGTATAATAGCTGCCGTGCTGCTTTGCAGACTGTTGAAGCGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

4.85

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	57 - 105	2.9e-12	Ring finger domain
zf-rbx1	PF12678	58 - 105	1.9e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	58 - 104	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	58 - 104	2.9e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AccII	CGCG	1 cut(s)	370
AciI	CCGC	1 cut(s)	16
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	116, 445
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	152, 419
AluI	AGCT	2 cut(s)	152, 419
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	3 cut(s)	29, 127, 281
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	223, 380
ApeKI	GCWGC	4 cut(s)	346, 388, 419, 427
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	4 cut(s)	358, 375, 406, 414
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	226, 407
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	29, 127, 281
BisI	GCNGC	4 cut(s)	347, 389, 420, 428
BlsI	GCNGC	4 cut(s)	348, 390, 421, 429
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	277, 326
Bse21I	CCTNAGG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	10, 107
BseMII	CTCAG	2 cut(s)	365, 375
BseNI	ACTGG	2 cut(s)	277, 326
BseXI	GCAGC	4 cut(s)	358, 375, 406, 414
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	225, 382
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	204
BsmAI	GTCTC	3 cut(s)	29, 127, 281
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	225, 382
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	225, 382
BspCNI	CTCAG	2 cut(s)	366, 374
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	277, 326
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	157, 397, 441
Bst6I	CTCTTC	2 cut(s)	330, 336
BstC8I	GCNNGC	3 cut(s)	96, 239, 248
BstDEI	CTNAG	2 cut(s)	361, 374
BstF5I	GGATG	2 cut(s)	10, 107
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	3 cut(s)	29, 127, 281
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 247, 388
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	4 cut(s)	358, 375, 406, 414
Bsu36I	CCTNAGG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	225, 382
BtsCI	GGATG	2 cut(s)	10, 107
BtsIMutI	CAGTG	2 cut(s)	284, 402
Cac8I	GCNNGC	3 cut(s)	96, 239, 248
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	312
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	88, 152, 225, 283, 349, 382, 419
CviKI_1	RGCY	7 cut(s)	88, 152, 225, 283, 349, 382, 419
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	361, 374
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	330, 336
EarI	CTCTTC	2 cut(s)	330, 336
Eco147I	AGGCCT	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	1 cut(s)	263
FaiI	YATR	6 cut(s)	22, 24, 92, 261, 332, 413
FalI	AAGNNNNNCTT	6 cut(s)	120, 152, 177, 209, 210, 242
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	347, 389, 420, 428
FokI	GGATG	2 cut(s)	17, 94
Fsp4HI	GCNGC	4 cut(s)	347, 389, 420, 428
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	4 cut(s)	347, 389, 420, 428
HaeIII	GGCC	2 cut(s)	225, 382
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	286, 363
HpyAV	CCTTC	2 cut(s)	110, 215
HpyCH4III	ACNGT	3 cut(s)	157, 397, 441
HpyCH4V	TGCA	4 cut(s)	56, 98, 270, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 247, 388
HpyF3I	CTNAG	2 cut(s)	361, 374
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	4 cut(s)	358, 375, 406, 414
MaeIII	GTNAC	2 cut(s)	66, 229
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	230, 347, 353
MhlI	GDGCHC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	181, 331, 370
MseI	TTAA	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	3 cut(s)	243, 247, 388
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	348, 390, 421, 429
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	4 cut(s)	347, 389, 420, 428
Sau3AI	GATC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	121, 154, 255, 421
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	137, 284
SmoI	CTYRAG	2 cut(s)	137, 284
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	16
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	157, 397, 441
TaqI	TCGA	2 cut(s)	285, 353
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	2 cut(s)	284, 402
TseI	GCWGC	4 cut(s)	346, 388, 419, 427
TspRI	CASTG	2 cut(s)	284, 402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.