Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003634.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

26614 .. 27318

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003634.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgatgaccggaagctggcgggcttatccatctacagacattactgtgcatgatatactagtcgtagcggaacaattttttcttgtccgagtccctgatttcctgcttttatccaaaaggcaaatgtatacagaggagctggctgaaattcttaccaaaatgagggtccctagatttgagcaaccagctatcattgataaactatttatgggggttgaactagctgacaaccccgacttgcctattgcttgttacataaaggatgtcaccgtatttcatcgtccgcatacccttcaattagattgtttcgagaaagtgagaattgataatttggaagatattgatagacagaaacaatgtgtcatttgtaaggagagccttggttgctttgagggtgtagaagaagggattgatcatggtcagcggatgattattcgcttgttctgctcacatctttatcacgaagattgcattttccaatggctggtgacgagtccgttatgccccatgtgccgatactcagtgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccagttgtggaacaggcagcggagctatcaaaaccatcatggcggcagctgcattggcctatgctgctcacagcgtctgcgggtggtatattaactgctttgctggtatgtagattattgaagcaaaggcaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

234

Amino Acids

26.96

Weight (kDa)

5.51

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	7 cut(s)	19, 68, 284, 424, 587, 610, 647
AcsI	RAATTY	1 cut(s)	147
AfiI	CCNNNNNNNGG	3 cut(s)	15, 162, 484
AgsI	TTSAA	3 cut(s)	218, 296, 688
AhlI	ACTAGT	1 cut(s)	58
AluBI	AGCT	6 cut(s)	15, 139, 188, 224, 592, 616
AluI	AGCT	6 cut(s)	15, 139, 188, 224, 592, 616
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	4 cut(s)	584, 613, 616, 631
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	259, 499
AvaII	GGWCC	1 cut(s)	166
BbvI	GCAGC	4 cut(s)	596, 603, 618, 625
BccI	CCATC	2 cut(s)	37, 610
BclI	TGATCA	1 cut(s)	412
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	3 cut(s)	59, 171, 221
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	5 cut(s)	585, 611, 614, 617, 632
BlsI	GCNGC	5 cut(s)	586, 612, 615, 618, 633
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	167, 168
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 162, 484
Bse118I	RCCGGY	2 cut(s)	526, 547
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	2 cut(s)	549, 570
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	268, 432
BseLI	CCNNNNNNNGG	3 cut(s)	15, 162, 484
BseMI	GCAATG	2 cut(s)	549, 570
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	596, 603, 618, 625
BshFI	GGCC	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	9, 527, 548
BslFI	GGGAC	2 cut(s)	77, 152
BslI	CCNNNNNNNGG	3 cut(s)	15, 162, 484
BsmFI	GGGAC	2 cut(s)	77, 152
BsnI	GGCC	1 cut(s)	625
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	7 cut(s)	19, 68, 284, 424, 587, 610, 647
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	1 cut(s)	533
BspLI	GGNNCC	2 cut(s)	167, 168
BsrDI	GCAATG	2 cut(s)	549, 570
BsrFI	RCCGGY	2 cut(s)	526, 547
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	2 cut(s)	526, 547
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	1 cut(s)	412
BssNAI	GTATAC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	379
Bst1107I	GTATAC	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	46, 271
BstC8I	GCNNGC	3 cut(s)	17, 21, 141
BstDEI	CTNAG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	268, 432
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	6 cut(s)	384, 444, 510, 616, 622, 631
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	596, 603, 618, 625
BstZ17I	GTATAC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	625
BtsCI	GGATG	2 cut(s)	268, 432
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	3 cut(s)	17, 21, 141
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr10I	RCCGGY	2 cut(s)	526, 547
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	630
CviAII	CATG	4 cut(s)	50, 416, 508, 606
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	4 cut(s)	53, 419, 511, 609
FaqI	GGGAC	2 cut(s)	77, 152
FatI	CATG	4 cut(s)	49, 415, 507, 605
FauI	CCCGC	2 cut(s)	12, 640
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	5 cut(s)	585, 611, 614, 617, 632
FokI	GGATG	2 cut(s)	275, 439
Fsp4HI	GCNGC	5 cut(s)	585, 611, 614, 617, 632
FspBI	CTAG	3 cut(s)	59, 171, 221
GluI	GCNGC	5 cut(s)	585, 611, 614, 617, 632
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	3 cut(s)	9, 527, 548
HgaI	GACGC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	53, 419, 511, 609
HinfI	GANTC	2 cut(s)	90, 493
HpaII	CCGG	3 cut(s)	9, 527, 548
HphI	GGTGA	2 cut(s)	259, 499
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	310, 461
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	302, 398
HpyCH4III	ACNGT	2 cut(s)	46, 271
HpyCH4V	TGCA	3 cut(s)	49, 471, 619
HpyF10VI	GCNNNNNNNGC	6 cut(s)	384, 444, 510, 616, 622, 631
HpyF3I	CTNAG	1 cut(s)	520
Hsp92II	CATG	4 cut(s)	53, 419, 511, 609
KflI	GGGWCCC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	136, 589
Lsp1109I	GCAGC	4 cut(s)	596, 603, 618, 625
MaeI	CTAG	3 cut(s)	59, 171, 221
MaeIII	GTNAC	3 cut(s)	251, 265, 487
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	3 cut(s)	347, 413, 476
MluCI	AATT	5 cut(s)	74, 147, 296, 321, 328
MlyI	GAGTC	2 cut(s)	99, 502
MnlI	CCTC	3 cut(s)	127, 156, 385
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	3 cut(s)	424, 587, 616
MspI	CCGG	3 cut(s)	9, 527, 548
MwoI	GCNNNNNNNGC	6 cut(s)	384, 444, 510, 616, 622, 631
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	4 cut(s)	53, 419, 511, 609
NlaIV	GGNNCC	2 cut(s)	167, 168
NmuCI	GTSAC	2 cut(s)	265, 487
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	586, 612, 615, 618, 633
PleI	GAGTC	2 cut(s)	98, 501
PpsI	GAGTC	2 cut(s)	98, 501
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	167, 168
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	5 cut(s)	585, 611, 614, 617, 632
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	99, 502
SetI	ASST	6 cut(s)	17, 141, 190, 226, 594, 618
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	5 cut(s)	74, 147, 296, 321, 328
SsiI	CCGC	7 cut(s)	19, 68, 284, 424, 587, 610, 647
SspMI	CTAG	3 cut(s)	59, 171, 221
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	46, 271
TaqI	TCGA	1 cut(s)	309
TasI	AATT	5 cut(s)	74, 147, 296, 321, 328
TauI	GCSGC	1 cut(s)	613
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	2 cut(s)	265, 487
TseI	GCWGC	4 cut(s)	584, 613, 616, 631
Tsp45I	GTSAC	2 cut(s)	265, 487
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	3 cut(s)	59, 171, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.