Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

10367655 .. 10369845

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG122300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCCACCGAGTACTTTTTTTTTAGCAGTGTGTCTCAAAGAAAAAGTATACCCCTTAGCTCTCCAGTCCCAAGCAACATGCGTGAGATCCTAATAAGGCATGCCATGATGACCGGAAGCTGGCGGGCTTATCCATCTACAGACATTACTGTGCATGATATACTAGTCGTAGCGGAACAATTTTTTCTTGTCCGAGTCCCTGATTTCCTGCTTTTATCCAAAAGGCAAATGTATACAGAGGAGCTGGCTGAAATTCTTACCAAAATGAGGGTCCCTAGATTTGAGCAACCAGCTATCATTGATAAACTATTTATGGGGGTTGAACTAGCTGACAACCCCGACTTGCCTATTGCTTGTTACATAAAGGATGTCACCGTATTTCATCGTCCGCATACCCTTCAATTAGATTGTTTCGAGAAAGTGAGAATTGATAATTTGGAAGATATTGATAGAGAGAAACAATGTGTCATTTGTAAGGAGAGCCTTGGTTGCTTTGAGGGTGTAGAAGAAGGGATTGATCATGGTCAGCGGATGATTATTCGCTTGTTCTGCTCACATCTTTATCACGAAGATTGCATTTTCCAATGGCTGGTGACGAGTCCGTTATGCCCCATGTGCCGATACTCAGTGCCGGTTGTGGAACAGGCAATGCCGGTTATGGAACAGGCAATGCCGGTTGTGGAACAGGCAATGCCAGTTGTGGAACAGGCAGCGGAGCTATCAAAACCATCATGGCGGCAGCTGCATTGGCCTATGCTGCTCACAGCGTCTGCGGGTGGTATATTAACTGCTTTGCTGGTATGTAGATTATTGAAGCAAAGGCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

276

Amino Acids

31.78

Weight (kDa)

5.65

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	154 - 207	4.2e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	154 - 207	6.4e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccI	GTMKAC	2 cut(s)	49, 233
AciI	CCGC	7 cut(s)	124, 173, 389, 529, 713, 736, 773
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	120, 267, 589
AgsI	TTSAA	3 cut(s)	323, 401, 814
AhlI	ACTAGT	1 cut(s)	163
AluBI	AGCT	7 cut(s)	60, 120, 244, 293, 329, 718, 742
AluI	AGCT	7 cut(s)	60, 120, 244, 293, 329, 718, 742
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	4 cut(s)	710, 739, 742, 757
ApoI	RAATTY	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	364, 604
AvaII	GGWCC	1 cut(s)	271
BbvI	GCAGC	4 cut(s)	722, 729, 744, 751
BccI	CCATC	2 cut(s)	142, 736
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	3 cut(s)	164, 276, 326
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	5 cut(s)	711, 737, 740, 743, 758
BlsI	GCNGC	5 cut(s)	712, 738, 741, 744, 759
BmcAI	AGTACT	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	272, 273
BpmI	CTGGAG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	484
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 267, 589
Bse118I	RCCGGY	3 cut(s)	631, 652, 673
Bse1I	ACTGG	2 cut(s)	65, 695
Bse3DI	GCAATG	3 cut(s)	654, 675, 696
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	373, 537
BseLI	CCNNNNNNNGG	3 cut(s)	120, 267, 589
BseMI	GCAATG	3 cut(s)	654, 675, 696
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	65, 695
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	722, 729, 744, 751
BshFI	GGCC	1 cut(s)	751
BsiSI	CCGG	4 cut(s)	114, 632, 653, 674
BslFI	GGGAC	3 cut(s)	53, 182, 257
BslI	CCNNNNNNNGG	3 cut(s)	120, 267, 589
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	3 cut(s)	53, 182, 257
BsnI	GGCC	1 cut(s)	751
Bsp143I	GATC	2 cut(s)	87, 517
BspACI	CCGC	7 cut(s)	124, 173, 389, 529, 713, 736, 773
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	1 cut(s)	638
BspLI	GGNNCC	2 cut(s)	272, 273
BspPI	GGATC	1 cut(s)	82
BsrDI	GCAATG	3 cut(s)	654, 675, 696
BsrFI	RCCGGY	3 cut(s)	631, 652, 673
BsrI	ACTGG	2 cut(s)	65, 695
BssAI	RCCGGY	3 cut(s)	631, 652, 673
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	87, 517
BssNAI	GTATAC	2 cut(s)	50, 234
BssT1I	CCWWGG	1 cut(s)	484
Bst1107I	GTATAC	2 cut(s)	50, 234
Bst4CI	ACNGT	2 cut(s)	151, 376
BstC8I	GCNNGC	4 cut(s)	102, 122, 126, 246
BstDEI	CTNAG	2 cut(s)	56, 625
BstF5I	GGATG	2 cut(s)	373, 537
BstKTI	GATC	2 cut(s)	90, 520
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	87, 517
BstMWI	GCNNNNNNNGC	6 cut(s)	489, 549, 615, 742, 748, 757
BstNSI	RCATGY	2 cut(s)	82, 104
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	4 cut(s)	722, 729, 744, 751
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZ17I	GTATAC	2 cut(s)	50, 234
BsuRI	GGCC	1 cut(s)	751
BtsCI	GGATG	2 cut(s)	373, 537
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 633
Cac8I	GCNNGC	4 cut(s)	102, 122, 126, 246
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr10I	RCCGGY	3 cut(s)	631, 652, 673
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	7 cut(s)	79, 101, 106, 155, 521, 613, 732
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	56, 625
DpnI	GATC	2 cut(s)	89, 519
DpnII	GATC	2 cut(s)	87, 517
Eco130I	CCWWGG	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	7 cut(s)	82, 104, 109, 158, 524, 616, 735
FaqI	GGGAC	3 cut(s)	53, 182, 257
FatI	CATG	7 cut(s)	78, 100, 105, 154, 520, 612, 731
FauI	CCCGC	2 cut(s)	117, 766
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	2 cut(s)	49, 233
Fnu4HI	GCNGC	5 cut(s)	711, 737, 740, 743, 758
FokI	GGATG	2 cut(s)	380, 544
Fsp4HI	GCNGC	5 cut(s)	711, 737, 740, 743, 758
FspBI	CTAG	3 cut(s)	164, 276, 326
GluI	GCNGC	5 cut(s)	711, 737, 740, 743, 758
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	4 cut(s)	114, 632, 653, 674
HgaI	GACGC	1 cut(s)	756
Hin1II	CATG	7 cut(s)	82, 104, 109, 158, 524, 616, 735
HinfI	GANTC	2 cut(s)	195, 598
HpaII	CCGG	4 cut(s)	114, 632, 653, 674
HphI	GGTGA	2 cut(s)	364, 604
Hpy166II	GTNNAC	3 cut(s)	6, 50, 234
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	415, 566
Hpy8I	GTNNAC	3 cut(s)	6, 50, 234
HpyAV	CCTTC	2 cut(s)	407, 503
HpyCH4III	ACNGT	2 cut(s)	151, 376
HpyCH4V	TGCA	3 cut(s)	154, 576, 745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	489, 549, 615, 742, 748, 757
HpyF3I	CTNAG	2 cut(s)	56, 625
Hsp92II	CATG	7 cut(s)	82, 104, 109, 158, 524, 616, 735
KflI	GGGWCCC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	87, 517
LmnI	GCTCC	2 cut(s)	241, 715
Lsp1109I	GCAGC	4 cut(s)	722, 729, 744, 751
MaeI	CTAG	3 cut(s)	164, 276, 326
MaeIII	GTNAC	3 cut(s)	356, 370, 592
MalI	GATC	2 cut(s)	89, 519
MboI	GATC	2 cut(s)	87, 517
MboII	GAAGA	3 cut(s)	452, 518, 581
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	5 cut(s)	179, 252, 401, 426, 433
MlyI	GAGTC	2 cut(s)	204, 607
MnlI	CCTC	3 cut(s)	232, 261, 490
MseI	TTAA	1 cut(s)	785
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	3 cut(s)	529, 713, 742
MspI	CCGG	4 cut(s)	114, 632, 653, 674
MwoI	GCNNNNNNNGC	6 cut(s)	489, 549, 615, 742, 748, 757
NdeII	GATC	2 cut(s)	87, 517
NlaIII	CATG	7 cut(s)	82, 104, 109, 158, 524, 616, 735
NlaIV	GGNNCC	2 cut(s)	272, 273
NmuCI	GTSAC	2 cut(s)	370, 592
NspI	RCATGY	2 cut(s)	82, 104
PaeI	GCATGC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	5 cut(s)	712, 738, 741, 744, 759
PleI	GAGTC	2 cut(s)	203, 606
PpsI	GAGTC	2 cut(s)	203, 606
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	272, 273
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	785
SatI	GCNGC	5 cut(s)	711, 737, 740, 743, 758
Sau3AI	GATC	2 cut(s)	87, 517
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	2 cut(s)	204, 607
SetI	ASST	7 cut(s)	62, 122, 246, 295, 331, 720, 744
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	163
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	5 cut(s)	179, 252, 401, 426, 433
SsiI	CCGC	7 cut(s)	124, 173, 389, 529, 713, 736, 773
SspMI	CTAG	3 cut(s)	164, 276, 326
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	151, 376
TaqI	TCGA	1 cut(s)	414
TasI	AATT	5 cut(s)	179, 252, 401, 426, 433
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	739
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	2 cut(s)	34, 633
TseFI	GTSAC	2 cut(s)	370, 592
TseI	GCWGC	4 cut(s)	710, 739, 742, 757
Tsp45I	GTSAC	2 cut(s)	370, 592
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	34, 633
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	2 cut(s)	82, 104
XmiI	GTMKAC	2 cut(s)	49, 233
XspI	CTAG	3 cut(s)	164, 276, 326
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.