Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

4206220 .. 4207892

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGGCAATTTTCAGACTCTCTATGAAGGCGTACTGCCACGAATATATTGGTTTTTCAAGCATGGCCGAGCCCGAGATTTCATTTGTTTGCAATATCGGTCCAAGAAAAGATTTGTCCCCCAACATTCCAATGCAAAGCAACTGGCGTGCAATTAGAATATACCACTCCTGGATTACTGGAACCTACCGGGGTAGTCCCGATTCACACCAAACCTATACTGATATATTAACCCTTGCAAACAGCGAAATTGTTGTGGTACTCCCTAAATTCTTGTATTATAGGAAAATGTATATGGAGAAGCTGGCTAAAGAATTTGCTGATATCAGAGTTCCAGAATCTATGATACCAGATATTGTTGATCGAGTATTTGAGGAGGTTGAACTGTCTGAAAACCCCGACTGGCCTATTGAGTGCGACATGACGTTTAAGTTCTTGTATCCTGAACTAAGGGATGTGGCCTCTCTTTTAGAATCTTCTGAGAAAGTGGGAATTGATAGTTTGGAATATGTTGATAGACAACAACTGTGTGTCATTTGTAGGGAGAGCCTTGATCACTCTGAAGGTGTAGAAGAAGAGATTGACTTTGTTCAACTGATTCGCTTGCCCTGCTCACATCTTTATCACAAAAGATGCATTTTTCAATGCCTGGAGATGATTGACTTCTGTCCCGTGTGCCGATACTCATTGTCGGATGCGGAACATTCATTTGCAGATGTGGAACATTCATTTACAGATGTGGAACGGTCATTGCCAGTTGCGGAACATTCATTTGCAGATGTGGAATATTCATTTGCAAATGTGGAACAATCATTGCCAGTTGTGGAACAAGTAGCCAAGCCATCAGAACCATTATGGCGGCAGCAGCGTTTACCTATGCTGCTTATAGCATCTGCGGGTGGTATATTAAGTGTTGTGCTGGTATTTAGATTATTGAAGCAAAACCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

318

Amino Acids

36.67

Weight (kDa)

4.84

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	173 - 224	4.9e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	698, 761, 859, 896
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	269, 314
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	35, 261
AgsI	TTSAA	5 cut(s)	60, 383, 593, 644, 937
AjnI	CCWGG	2 cut(s)	170, 648
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	66, 404, 459
ApeKI	GCWGC	3 cut(s)	862, 865, 880
ApoI	RAATTY	2 cut(s)	269, 314
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	867, 874, 877
BccI	CCATC	1 cut(s)	850
BciT130I	CCWGG	2 cut(s)	172, 650
BciVI	GTATCC	1 cut(s)	450
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	4 cut(s)	860, 863, 866, 881
BlsI	GCNGC	4 cut(s)	861, 864, 867, 882
Bme1390I	CCNGG	3 cut(s)	172, 191, 650
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	172, 191, 650
BmsI	GCATC	3 cut(s)	623, 685, 899
BoxI	GACNNNNGTC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	190
Bse1I	ACTGG	5 cut(s)	149, 184, 407, 755, 818
Bse3DI	GCAATG	2 cut(s)	749, 812
BseBI	CCWGG	2 cut(s)	172, 650
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	460, 700
BseMI	GCAATG	2 cut(s)	749, 812
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	5 cut(s)	149, 184, 407, 755, 818
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	867, 874, 877
BshFI	GGCC	3 cut(s)	68, 406, 461
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	3 cut(s)	103, 183, 654
BsmFI	GGGAC	3 cut(s)	103, 183, 654
BsnI	GGCC	3 cut(s)	68, 406, 461
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	361, 553
BspACI	CCGC	4 cut(s)	698, 761, 859, 896
BspANI	GGCC	3 cut(s)	68, 406, 461
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	184
BsrDI	GCAATG	2 cut(s)	749, 812
BsrI	ACTGG	5 cut(s)	149, 184, 407, 755, 818
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	361, 553
Bst2UI	CCWGG	2 cut(s)	172, 650
Bst4CI	ACNGT	3 cut(s)	387, 528, 747
Bst6I	CTCTTC	1 cut(s)	570
BstC8I	GCNNGC	3 cut(s)	150, 306, 605
BstDEI	CTNAG	2 cut(s)	449, 480
BstF5I	GGATG	2 cut(s)	460, 700
BstKTI	GATC	2 cut(s)	364, 556
BstMBI	GATC	2 cut(s)	361, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 865
BstNI	CCWGG	2 cut(s)	172, 650
BstPAI	GACNNNNGTC	1 cut(s)	666
BstSCI	CCNGG	3 cut(s)	170, 189, 648
BstV1I	GCAGC	3 cut(s)	867, 874, 877
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	68, 406, 461
BtsCI	GGATG	2 cut(s)	460, 700
Cac8I	GCNNGC	3 cut(s)	150, 306, 605
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	34, 260
CviAII	CATG	2 cut(s)	64, 421
CviJI	RGCY	9 cut(s)	68, 73, 304, 308, 406, 461, 549, 836, 841
CviKI_1	RGCY	9 cut(s)	68, 73, 304, 308, 406, 461, 549, 836, 841
CviQI	GTAC	2 cut(s)	34, 260
DdeI	CTNAG	2 cut(s)	449, 480
DpnI	GATC	2 cut(s)	363, 555
DpnII	GATC	2 cut(s)	361, 553
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	170, 648
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	638
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	2 cut(s)	67, 424
FaqI	GGGAC	3 cut(s)	103, 183, 654
FatI	CATG	2 cut(s)	63, 420
FauI	CCCGC	1 cut(s)	889
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	860, 863, 866, 881
FokI	GGATG	2 cut(s)	467, 707
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	4 cut(s)	860, 863, 866, 881
GluI	GCNGC	4 cut(s)	860, 863, 866, 881
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	3 cut(s)	68, 406, 461
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	2 cut(s)	67, 424
HinfI	GANTC	5 cut(s)	18, 203, 338, 473, 598
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	7 cut(s)	17, 329, 391, 481, 562, 694, 847
Hpy188III	TCNNGA	3 cut(s)	200, 335, 443
Hpy8I	GTNNAC	1 cut(s)	872
HpyAV	CCTTC	2 cut(s)	22, 557
HpyCH4III	ACNGT	3 cut(s)	387, 528, 747
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	8 cut(s)	93, 136, 152, 239, 636, 713, 776, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 865
HpyF3I	CTNAG	2 cut(s)	449, 480
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	67, 424
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	361, 553
Lsp1109I	GCAGC	3 cut(s)	867, 874, 877
LweI	GCATC	3 cut(s)	623, 685, 899
MaeII	ACGT	1 cut(s)	425
MalI	GATC	2 cut(s)	363, 555
MboI	GATC	2 cut(s)	361, 553
MboII	GAAGA	3 cut(s)	468, 584, 587
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	6 cut(s)	9, 153, 249, 269, 314, 492
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	3 cut(s)	367, 370, 472
Mph1103I	ATGCAT	1 cut(s)	638
MseI	TTAA	3 cut(s)	230, 429, 908
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	3 cut(s)	172, 191, 650
MvaI	CCWGG	2 cut(s)	172, 650
MwoI	GCNNNNNNNGC	2 cut(s)	609, 865
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	361, 553
NlaIII	CATG	2 cut(s)	67, 424
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	638
PfeI	GAWTC	4 cut(s)	203, 338, 473, 598
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	861, 864, 867, 882
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	170, 648
PspGI	CCWGG	2 cut(s)	170, 648
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	35, 261
RsaNI	GTAC	2 cut(s)	34, 260
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	230, 429, 908
SatI	GCNGC	4 cut(s)	860, 863, 866, 881
Sau3AI	GATC	2 cut(s)	361, 553
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	172, 191, 650
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	7 cut(s)	188, 218, 306, 381, 428, 568, 877
SfaNI	GCATC	3 cut(s)	623, 685, 899
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	6 cut(s)	9, 153, 249, 269, 314, 492
SsiI	CCGC	4 cut(s)	698, 761, 859, 896
SspI	AATATT	1 cut(s)	788
StyD4I	CCNGG	3 cut(s)	170, 189, 648
TaaI	ACNGT	3 cut(s)	387, 528, 747
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	364
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	6 cut(s)	9, 153, 249, 269, 314, 492
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	4 cut(s)	203, 338, 473, 598
Tru1I	TTAA	3 cut(s)	230, 429, 908
Tru9I	TTAA	3 cut(s)	230, 429, 908
TseI	GCWGC	3 cut(s)	862, 865, 880
TspDTI	ATGAA	6 cut(s)	41, 72, 696, 717, 759, 780
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	269, 314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.