Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

8654584 .. 8655781

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG110000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAACTCCTTTGATGCTTGCAACTACTACAAGTTACTGATGCTCCCTATTAATACCAGTTTTTCAAGCATGTCCACCGAGGAGAACTTGTTTCTTAGCAGTGTGTTTCAAAGAAAAGATGTATCCCTTGACTTTGCAGTCCCAAGCAACAAGCGTGTGATCAGAATATCGCACGCCATGCTGACTGGAACCTGCTCTGGTGATGCCCTTACAGACATTGCCTATCATGATATATGTACTCTAGCAGACCATCAAGTTATTGTCTCAGTCCCTGATTTCCTGCTTTTATCCGTAAGGCAATATTATACAGAGAAGATGGCTGAAATTCTTACCAAATTGAAGGTCCCAGAATTTGAGCAACCACCTATCATTGACAAAATATTTATGGAGGTTGAACTGGCTGACAACCCTGAGTGGCCTATTGCTTGCTTTATAAAGGATATCACCTTATTTCATCAGACGATCAACCTGGCCTATCAGTTAGAGAGTTTCAAGAAAGTGAGAATTGATTGTTTGGAAGATATTTTTAGGCAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAAGGTGTAGAAGAAGGGATTGATCGTGGTCAGCTAATGATTATTCGCTTGTCCTGCTCACATCTTTATCATGAAGATTGCATTTTCCAATGGCTGGCGAAGAGTCAGTTGTGTCCGTTGTGTCGACACTCAATGCCAGTTGTGGAGCAGGCGACGCGGGTTGTTGAACAGGCGATGCCGGTGGTGGAACAGGCGATTCTGGTTGTTGAACAGGCGATGCCGGTTGTGGAACAGGCAGCTGAGTCATCGAAACCATCATGGTGGCATCTGCATTGGCCTATGCTGCTCACAGCATCTGCGGGTGGTATATTAACCGCTATGCTGGTATGTAAATTATTGAAGCAAAGGCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

309

Amino Acids

35.32

Weight (kDa)

5.29

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	179 - 233	6.9e-09	Ring finger domain
zf-rbx1	PF12678	180 - 233	3.5e-10	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	209 - 232	3.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	1 cut(s)	730
AciI	CCGC	3 cut(s)	730, 872, 888
AcsI	RAATTY	2 cut(s)	324, 350
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	9 cut(s)	66, 110, 340, 395, 493, 575, 740, 782, 913
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	2 cut(s)	607, 812
AluI	AGCT	2 cut(s)	607, 812
Alw26I	GTCTC	1 cut(s)	268
AlwNI	CAGNNNCTG	2 cut(s)	272, 869
AoxI	GGCC	3 cut(s)	416, 471, 848
ApeKI	GCWGC	3 cut(s)	532, 809, 856
ApoI	RAATTY	2 cut(s)	324, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
AseI	ATTAAT	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	212, 436
AvaII	GGWCC	1 cut(s)	343
BbvI	GCAGC	3 cut(s)	544, 821, 843
BccI	CCATC	3 cut(s)	258, 310, 835
BciT130I	CCWGG	1 cut(s)	470
BciVI	GTATCC	1 cut(s)	133
BclI	TGATCA	2 cut(s)	159, 565
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	533, 810, 857
BlsI	GCNGC	3 cut(s)	534, 811, 858
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	190, 345
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	7 cut(s)	4, 30, 193, 738, 780, 847, 875
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse118I	RCCGGY	2 cut(s)	751, 793
Bse1I	ACTGG	4 cut(s)	57, 190, 402, 710
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	279, 402, 804
BseNI	ACTGG	4 cut(s)	57, 190, 402, 710
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	544, 821, 843
Bsh1236I	CGCG	1 cut(s)	730
BshFI	GGCC	3 cut(s)	418, 473, 850
BsiSI	CCGG	2 cut(s)	752, 794
BslFI	GGGAC	3 cut(s)	125, 254, 329
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	3 cut(s)	125, 254, 329
BsnI	GGCC	3 cut(s)	418, 473, 850
Bsp143I	GATC	4 cut(s)	159, 462, 565, 595
BspACI	CCGC	3 cut(s)	730, 872, 888
BspANI	GGCC	3 cut(s)	418, 473, 850
BspCNI	CTCAG	3 cut(s)	278, 403, 805
BspFNI	CGCG	1 cut(s)	730
BspHI	TCATGA	2 cut(s)	226, 643
BspLI	GGNNCC	2 cut(s)	190, 345
BspMI	ACCTGC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	751, 793
BsrI	ACTGG	4 cut(s)	57, 190, 402, 710
BssAI	RCCGGY	2 cut(s)	751, 793
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	4 cut(s)	159, 462, 565, 595
Bst2UI	CCWGG	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	5 cut(s)	19, 174, 427, 669, 723
BstDEI	CTNAG	4 cut(s)	95, 265, 411, 813
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	4 cut(s)	162, 465, 568, 598
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	4 cut(s)	159, 462, 565, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 627, 727, 856
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	3 cut(s)	544, 821, 843
BstXI	CCANNNNNNTGG	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	418, 473, 850
BtgZI	GCGATG	2 cut(s)	761, 803
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	19, 174, 427, 669, 723
CaiI	CAGNNNCTG	2 cut(s)	272, 869
CciI	TCATGA	2 cut(s)	226, 643
Cfr10I	RCCGGY	2 cut(s)	751, 793
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	736
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	5 cut(s)	70, 178, 227, 644, 831
CviJI	RGCY	9 cut(s)	320, 401, 418, 473, 561, 607, 667, 812, 850
CviKI_1	RGCY	9 cut(s)	320, 401, 418, 473, 561, 607, 667, 812, 850
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	4 cut(s)	95, 265, 411, 813
DpnI	GATC	4 cut(s)	161, 464, 567, 597
DpnII	GATC	4 cut(s)	159, 462, 565, 595
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	5 cut(s)	73, 181, 230, 647, 834
FaqI	GGGAC	3 cut(s)	125, 254, 329
FatI	CATG	5 cut(s)	69, 177, 226, 643, 830
FauI	CCCGC	2 cut(s)	723, 865
FbaI	TGATCA	2 cut(s)	159, 565
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	533, 810, 857
Fsp4HI	GCNGC	3 cut(s)	533, 810, 857
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	3 cut(s)	533, 810, 857
HaeIII	GGCC	3 cut(s)	418, 473, 850
HapII	CCGG	2 cut(s)	752, 794
HgaI	GACGC	1 cut(s)	736
Hin1II	CATG	5 cut(s)	73, 181, 230, 647, 834
HincII	GTYRAC	1 cut(s)	698
HindII	GTYRAC	1 cut(s)	698
HinfI	GANTC	3 cut(s)	676, 769, 815
HpaII	CCGG	2 cut(s)	752, 794
HphI	GGTGA	2 cut(s)	212, 436
Hpy166II	GTNNAC	2 cut(s)	75, 698
Hpy188I	TCNGA	2 cut(s)	164, 459
Hpy188III	TCNNGA	3 cut(s)	227, 493, 644
Hpy8I	GTNNAC	2 cut(s)	75, 698
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	3 cut(s)	334, 569, 581
HpyCH4V	TGCA	4 cut(s)	21, 137, 654, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 627, 727, 856
HpyF3I	CTNAG	4 cut(s)	95, 265, 411, 813
Hsp92II	CATG	5 cut(s)	73, 181, 230, 647, 834
Ksp22I	TGATCA	2 cut(s)	159, 565
Kzo9I	GATC	4 cut(s)	159, 462, 565, 595
LmnI	GCTCC	2 cut(s)	48, 718
Lsp1109I	GCAGC	3 cut(s)	544, 821, 843
LweI	GCATC	7 cut(s)	4, 30, 193, 738, 780, 847, 875
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	4 cut(s)	161, 464, 567, 597
MboI	GATC	4 cut(s)	159, 462, 565, 595
MboII	GAAGA	5 cut(s)	325, 530, 596, 659, 685
MluCI	AATT	5 cut(s)	324, 335, 350, 504, 905
MlyI	GAGTC	2 cut(s)	685, 824
MnlI	CCTC	2 cut(s)	73, 382
MseI	TTAA	2 cut(s)	51, 884
MslI	CAYNNNNRTG	1 cut(s)	832
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	2 cut(s)	752, 794
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	730
MwoI	GCNNNNNNNGC	4 cut(s)	178, 627, 727, 856
NdeII	GATC	4 cut(s)	159, 462, 565, 595
NlaIII	CATG	5 cut(s)	73, 181, 230, 647, 834
NlaIV	GGNNCC	2 cut(s)	190, 345
NspI	RCATGY	1 cut(s)	73
PagI	TCATGA	2 cut(s)	226, 643
PfeI	GAWTC	1 cut(s)	769
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	3 cut(s)	534, 811, 858
PleI	GAGTC	2 cut(s)	684, 823
PpsI	GAGTC	2 cut(s)	684, 823
PpuMI	RGGWCCY	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	190, 345
PspPI	GGNCC	1 cut(s)	343
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	2 cut(s)	272, 869
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	832
SalI	GTCGAC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	51, 884
SatI	GCNGC	3 cut(s)	533, 810, 857
Sau3AI	GATC	4 cut(s)	159, 462, 565, 595
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	2 cut(s)	685, 824
ScrFI	CCNGG	1 cut(s)	470
SetI	ASST	9 cut(s)	194, 345, 367, 393, 449, 471, 580, 609, 814
SfaNI	GCATC	7 cut(s)	4, 30, 193, 738, 780, 847, 875
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	832
Sse9I	AATT	5 cut(s)	324, 335, 350, 504, 905
SsiI	CCGC	3 cut(s)	730, 872, 888
SspI	AATATT	2 cut(s)	302, 381
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	468
TaqI	TCGA	2 cut(s)	697, 821
TasI	AATT	5 cut(s)	324, 335, 350, 504, 905
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	2 cut(s)	51, 884
Tru9I	TTAA	2 cut(s)	51, 884
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	3 cut(s)	532, 809, 856
TspDTI	ATGAA	3 cut(s)	17, 443, 660
TspGWI	ACGGA	2 cut(s)	280, 678
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	324, 350
XceI	RCATGY	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.