Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

61990862 .. 61992344

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0504300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTCAGAGCGAGTTGGCCTCCGCCACTGAGTCCCCAAAATCATTGCCGCCCACTCCATACTTCTCAATGCTACTCTCCCCAACCAATTTCGCACCATTTCTCAGATCATCATCACCCTCCTCATCTTCTTCCAAGAAGCCCAGTTTTGTTCTTCCCGATATTCAATCTTCCATCGCTTCCGCAACCCACAACTGCCTCGAATTGCTCCACTCACTGGCTTCGCAGAACCCTTTTCTCAACAAACTAATCTCCTTCCATGGCGAATTCCAGAGTTTCTGCCACCAGGTTCAGACTACGAGGTACAGGAAGTTGAAGAGTTTATCTACTCACAATTTCGCGGCGGTTTTACCTGGGGACTCGGTGGCCGGACTTGTCGTTGCAAATGGGGTCTCCAACTTCTTGAACTTATACAACACTCTATTGGTCTGCAGGCTTGTGTTGACCTGGTTCCCAAACTCCCCTCCTGCCATTGTAGGCCCTCTCAGTACAATATGTGACCCTTACTTGAACATATTTCGGGGGCTAATCCCGCCACTCGGAGGCACATTGGATCTCTCTCCCATTCTGGCATTCTTGGTTCTAAATGCCTTTACAAGCACAGCCGCCGCGCTACCGGCCGAGCTTCCAGCATCACCGGCAGCTTCCCAAGAACTCGGTGCTTCTTCTGCTACTGGAATTACTCACCTCACTACGCCGCAGAAGAAATGGATCACAAGGCTTCAGGGTAGCAACACAAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

248

Amino Acids

26.41

Weight (kDa)

9.16

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB3_YggT	PF02325	134 - 198	8e-16	CCB3/YggT

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	2 cut(s)	341, 611
AciI	CCGC	9 cut(s)	24, 50, 183, 341, 344, 533, 606, 609, 698
AclWI	GGATC	2 cut(s)	561, 719
AcoI	YGGCCR	2 cut(s)	366, 618
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	305, 490
AfiI	CCNNNNNNNGG	3 cut(s)	217, 539, 542
AgsI	TTSAA	4 cut(s)	167, 316, 406, 511
AjnI	CCWGG	3 cut(s)	285, 352, 446
AluBI	AGCT	3 cut(s)	625, 644, 744
AluI	AGCT	3 cut(s)	625, 644, 744
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	561, 719
AoxI	GGCC	4 cut(s)	18, 366, 478, 618
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	108, 627, 677
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	3 cut(s)	287, 354, 448
BcoDI	GTCTC	1 cut(s)	397
BfmI	CTRYAG	1 cut(s)	430
BisI	GCNGC	6 cut(s)	50, 342, 606, 609, 642, 698
BlsI	GCNGC	6 cut(s)	51, 343, 607, 610, 643, 699
Bme1390I	CCNGG	3 cut(s)	287, 354, 448
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	3 cut(s)	287, 354, 448
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	138
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	259, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 539, 542
Bse118I	RCCGGY	2 cut(s)	616, 637
Bse1I	ACTGG	3 cut(s)	144, 222, 679
Bse3DI	GCAATG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	112
BseBI	CCWGG	3 cut(s)	287, 354, 448
BseDI	CCNNGG	2 cut(s)	259, 353
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	3 cut(s)	217, 539, 542
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	4 cut(s)	20, 21, 118, 499
BseNI	ACTGG	3 cut(s)	144, 222, 679
BseRI	GAGGAG	1 cut(s)	112
BseX3I	CGGCCG	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	653
Bsh1236I	CGCG	2 cut(s)	341, 611
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	4 cut(s)	20, 368, 480, 620
BsiEI	CGRYCG	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	369, 617, 638
BslFI	GGGAC	2 cut(s)	19, 371
BslI	CCNNNNNNNGG	3 cut(s)	217, 539, 542
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	19, 371
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	4 cut(s)	20, 368, 480, 620
Bso31I	GGTCTC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	107, 553, 711
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	9 cut(s)	24, 50, 183, 341, 344, 533, 606, 609, 698
BspANI	GGCC	4 cut(s)	20, 368, 480, 620
BspCNI	CTCAG	4 cut(s)	19, 22, 117, 498
BspFNI	CGCG	2 cut(s)	341, 611
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	434
BspPI	GGATC	2 cut(s)	561, 719
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	616, 637
BsrI	ACTGG	3 cut(s)	144, 222, 679
BssAI	RCCGGY	2 cut(s)	616, 637
BssECI	CCNNGG	2 cut(s)	259, 353
BssMI	GATC	3 cut(s)	107, 553, 711
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	3 cut(s)	287, 354, 448
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	4 cut(s)	6, 30, 104, 485
BstDSI	CCRYGG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	341, 611
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	3 cut(s)	110, 556, 714
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	107, 553, 711
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	4 cut(s)	532, 617, 638, 668
BstNI	CCWGG	3 cut(s)	287, 354, 448
BstSCI	CCNGG	3 cut(s)	285, 352, 446
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	2 cut(s)	341, 611
BstV1I	GCAGC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BstZI	CGGCCG	1 cut(s)	618
BsuRI	GGCC	4 cut(s)	20, 368, 480, 620
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	27, 215
Cac8I	GCNNGC	1 cut(s)	434
CfoI	GCGC	1 cut(s)	613
Cfr10I	RCCGGY	2 cut(s)	616, 637
Cfr13I	GGNCC	1 cut(s)	479
CsiI	ACCWGGT	2 cut(s)	285, 446
Csp6I	GTAC	2 cut(s)	304, 489
CviAII	CATG	1 cut(s)	260
CviQI	GTAC	2 cut(s)	304, 489
DdeI	CTNAG	4 cut(s)	6, 30, 104, 485
DpnI	GATC	3 cut(s)	109, 555, 713
DpnII	GATC	3 cut(s)	107, 553, 711
EaeI	YGGCCR	2 cut(s)	366, 618
EagI	CGGCCG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	285, 352, 446
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	263
FaiI	YATR	5 cut(s)	61, 261, 412, 496, 515
FaqI	GGGAC	2 cut(s)	19, 371
FatI	CATG	1 cut(s)	259
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	6 cut(s)	50, 342, 606, 609, 642, 698
Fsp4HI	GCNGC	6 cut(s)	50, 342, 606, 609, 642, 698
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	6 cut(s)	50, 342, 606, 609, 642, 698
HaeIII	GGCC	4 cut(s)	20, 368, 480, 620
HapII	CCGG	3 cut(s)	369, 617, 638
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	32, 359
HpaII	CCGG	3 cut(s)	369, 617, 638
HphI	GGTGA	3 cut(s)	108, 627, 677
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	4 cut(s)	9, 107, 294, 542
Hpy188III	TCNNGA	3 cut(s)	158, 271, 403
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	383, 432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	532, 617, 638, 668
HpyF3I	CTNAG	4 cut(s)	6, 30, 104, 485
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	3 cut(s)	107, 553, 711
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	1 cut(s)	641
MabI	ACCWGGT	2 cut(s)	285, 446
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	3 cut(s)	109, 555, 713
MboI	GATC	3 cut(s)	107, 553, 711
MboII	GAAGA	7 cut(s)	120, 123, 146, 162, 328, 657, 715
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	5 cut(s)	88, 203, 266, 334, 678
MlyI	GAGTC	2 cut(s)	41, 353
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	9 cut(s)	31, 130, 133, 209, 294, 474, 492, 536, 698
MspI	CCGG	3 cut(s)	369, 617, 638
MspR9I	CCNGG	3 cut(s)	287, 354, 448
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	3 cut(s)	287, 354, 448
MvnI	CGCG	2 cut(s)	341, 611
MwoI	GCNNNNNNNGC	4 cut(s)	532, 617, 638, 668
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	3 cut(s)	107, 553, 711
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	1 cut(s)	497
PctI	GAATGC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	51, 343, 607, 610, 643, 699
PleI	GAGTC	2 cut(s)	40, 353
PpsI	GAGTC	2 cut(s)	40, 353
Psp6I	CCWGG	3 cut(s)	285, 352, 446
PspGI	CCWGG	3 cut(s)	285, 352, 446
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	2 cut(s)	305, 490
RsaNI	GTAC	2 cut(s)	304, 489
SatI	GCNGC	6 cut(s)	50, 342, 606, 609, 642, 698
Sau3AI	GATC	3 cut(s)	107, 553, 711
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	41, 353
ScrFI	CCNGG	3 cut(s)	287, 354, 448
SetI	ASST	8 cut(s)	291, 305, 355, 449, 627, 646, 690, 746
SexAI	ACCWGGT	2 cut(s)	285, 446
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	430
Sse9I	AATT	5 cut(s)	88, 203, 266, 334, 678
SsiI	CCGC	9 cut(s)	24, 50, 183, 341, 344, 533, 606, 609, 698
StyD4I	CCNGG	3 cut(s)	285, 352, 446
StyI	CCWWGG	1 cut(s)	259
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	88, 203, 266, 334, 678
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	5 cut(s)	52, 344, 608, 611, 700
TscAI	CASTG	2 cut(s)	34, 222
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	497
TspRI	CASTG	2 cut(s)	34, 222
Van91I	CCANNNNNTGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.