Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

4712653 .. 4714879

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08080.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGATTTAAATTTGACATACACAAACTTTCCTTTTCTTCAACCATGTCCACTGGAGAGATTCTACATTTTTATGGAACTGAAGCTTTTCAAAGAAGAGATGCACGTATTCCCTATGGACTCCCAAGCAACAGGCTTGTAATCAGACTTTTGCTCTACAAGATGAGTGGAAGCCGTCCTAGCGATACGCCTGGAGCTATAACTTTTGATTATCCGAGAGCTTCTTCTACGATCGTAGCAGACAAGAAAATTCAGATTGAACTACCTGATTTCTTGGAATCATCTGAAAGGCAAAAGCATAGTGTGATATTGGCTGAGGTTCTTACCAGCATGGACATCCCAGAAGTTGAGCATCAGACTATTATTAATGAAATATTTTACGCTGTTGAGATGGCAGACGTCCCTGGGCCGCCTATTTATTGTATCATATGTGATGCGACTCTCAGATTGACAAGACCAATGCATAGACCCAAGGTCGTTAATTTAGAATCTCTGGAGAAAGTGAGACTTGATAGCTTGGAAGATTCTGCTAGACAAGAAGAGTGTGTTATTTGTAGAGAGGGTCTTGATCACTTTGAGGGTGTAGAAGGTATTGAGGACCAGCTGATGATTACTCGCTTGCCCTGCCGGCATCTTTATCATGGAGATTGCATTGTCAAATGGTCGGAGGTGAATCAGTTGTGTCCCTCGTGCCGAGAGCCAATGCCAACAATAGAGCAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGTTTGTGAGCCATCAAAACTACCAGGGCAGAAGCTGAATTGGCCTATGATTCTTACAGTGTCCACTGGTGGTATGTTGGCTGCTATGCTGGCTTGCAGATTGTGGAAGCAAAGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

291

Amino Acids

33.16

Weight (kDa)

5.05

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	181 - 232	8.2e-09	Ring finger domain
zf-rbx1	PF12678	181 - 232	2.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	402
AciI	CCGC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	11, 249
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	42, 92, 260
AhdI	GACNNNNNGTC	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	190, 403, 775
AluBI	AGCT	6 cut(s)	86, 197, 221, 516, 604, 787
AluI	AGCT	6 cut(s)	86, 197, 221, 516, 604, 787
Alw26I	GTCTC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	787
AoxI	GGCC	2 cut(s)	407, 794
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	2 cut(s)	11, 249
AseI	ATTAAT	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	407, 598
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	598
BauI	CACGAG	1 cut(s)	688
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	2 cut(s)	385, 772
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	3 cut(s)	192, 405, 777
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	2 cut(s)	180, 531
BglI	GCCNNNNNGGC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	410, 834
BlsI	GCNGC	2 cut(s)	411, 835
Bme1390I	CCNGG	3 cut(s)	192, 405, 777
Bme18I	GGWCC	1 cut(s)	598
BmeRI	GACNNNNNGTC	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	407, 598
BmrFI	CCNGG	3 cut(s)	192, 405, 777
BmsI	GCATC	4 cut(s)	91, 361, 424, 640
BpmI	CTGGAG	3 cut(s)	75, 213, 515
Bpu10I	CCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	4 cut(s)	403, 404, 471, 776
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	2 cut(s)	58, 823
BseBI	CCWGG	3 cut(s)	192, 405, 777
BseDI	CCNNGG	4 cut(s)	403, 404, 471, 776
BseGI	GGATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	306, 457
BseNI	ACTGG	2 cut(s)	58, 823
BseRI	GAGGAG	8 cut(s)	740, 743, 746, 749, 752, 755, 758, 761
BseXI	GCAGC	1 cut(s)	820
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	409, 796
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	628
BslFI	GGGAC	2 cut(s)	386, 669
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	386, 669
BsnI	GGCC	2 cut(s)	409, 796
Bsp143I	GATC	2 cut(s)	231, 568
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	2 cut(s)	409, 796
BspCNI	CTCAG	2 cut(s)	307, 456
BsrFI	RCCGGY	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	58, 823
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	4 cut(s)	403, 404, 471, 776
BssMI	GATC	2 cut(s)	231, 568
BssNI	GRCGYC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	688
Bst2UI	CCWGG	3 cut(s)	192, 405, 777
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	3 cut(s)	91, 534, 717
BstACI	GRCGYC	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	4 cut(s)	620, 629, 843, 847
BstDEI	CTNAG	2 cut(s)	315, 443
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	2 cut(s)	234, 571
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	2 cut(s)	231, 568
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 624, 628, 793, 842
BstNI	CCWGG	3 cut(s)	192, 405, 777
BstSCI	CCNGG	3 cut(s)	190, 403, 775
BstV1I	GCAGC	1 cut(s)	820
BsuRI	GGCC	2 cut(s)	409, 796
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	51, 816, 816
Cac8I	GCNNGC	4 cut(s)	620, 629, 843, 847
CaiI	CAGNNNCTG	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	2 cut(s)	407, 598
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	3 cut(s)	46, 331, 641
DdeI	CTNAG	2 cut(s)	315, 443
DpnI	GATC	2 cut(s)	233, 570
DpnII	GATC	2 cut(s)	231, 568
DraI	TTTAAA	1 cut(s)	10
DriI	GACNNNNNGTC	1 cut(s)	473
Eam1104I	CTCTTC	3 cut(s)	91, 534, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	473
EarI	CTCTTC	3 cut(s)	91, 534, 717
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	3 cut(s)	190, 403, 775
EcoT14I	CCWWGG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	49, 334, 644
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	2 cut(s)	386, 669
FatI	CATG	3 cut(s)	45, 330, 640
FauNDI	CATATG	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	2 cut(s)	410, 834
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	410, 834
FspBI	CTAG	2 cut(s)	180, 531
GluI	GCNGC	2 cut(s)	410, 834
GsuI	CTGGAG	3 cut(s)	75, 213, 515
HaeIII	GGCC	2 cut(s)	409, 796
HapII	CCGG	1 cut(s)	628
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	49, 334, 644
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	8 cut(s)	61, 120, 278, 439, 488, 524, 673, 802
HpaII	CCGG	1 cut(s)	628
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	2 cut(s)	51, 816
Hpy188I	TCNGA	7 cut(s)	146, 216, 255, 286, 357, 446, 667
Hpy188III	TCNNGA	2 cut(s)	494, 566
Hpy8I	GTNNAC	2 cut(s)	51, 816
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4IV	ACGT	2 cut(s)	106, 399
HpyCH4V	TGCA	4 cut(s)	104, 463, 651, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 624, 628, 793, 842
HpyF3I	CTNAG	2 cut(s)	315, 443
HpySE526I	ACGT	2 cut(s)	106, 399
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	49, 334, 644
KroI	GCCGGC	1 cut(s)	627
KroNI	GCCGGC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	231, 568
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	820
LweI	GCATC	4 cut(s)	91, 361, 424, 640
MaeI	CTAG	2 cut(s)	180, 531
MaeII	ACGT	2 cut(s)	106, 399
MalI	GATC	2 cut(s)	233, 570
MboI	GATC	2 cut(s)	231, 568
MboII	GAAGA	6 cut(s)	30, 108, 216, 533, 551, 734
MluCI	AATT	4 cut(s)	11, 249, 481, 790
MlyI	GAGTC	2 cut(s)	114, 433
MmeI	TCCRAC	1 cut(s)	645
Mph1103I	ATGCAT	1 cut(s)	465
MroNI	GCCGGC	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	9, 366, 480
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	1 cut(s)	628
MspR9I	CCNGG	3 cut(s)	192, 405, 777
MvaI	CCWGG	3 cut(s)	192, 405, 777
MwoI	GCNNNNNNNGC	5 cut(s)	180, 624, 628, 793, 842
NaeI	GCCGGC	1 cut(s)	629
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	2 cut(s)	231, 568
NgoMIV	GCCGGC	1 cut(s)	627
NlaIII	CATG	3 cut(s)	49, 334, 644
NmeAIII	GCCGAG	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	465
PasI	CCCWGGG	1 cut(s)	404
PdiI	GCCGGC	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	6 cut(s)	61, 278, 488, 524, 673, 802
PkrI	GCNGC	2 cut(s)	411, 835
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	2 cut(s)	114, 433
PpsI	GAGTC	2 cut(s)	114, 433
Ppu21I	YACGTR	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	190, 403, 775
PspGI	CCWGG	3 cut(s)	190, 403, 775
PspPI	GGNCC	2 cut(s)	407, 598
PstNI	CAGNNNCTG	1 cut(s)	787
PvuI	CGATCG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	9, 366, 480
SatI	GCNGC	2 cut(s)	410, 834
Sau3AI	GATC	2 cut(s)	231, 568
Sau96I	GGNCC	2 cut(s)	407, 598
SchI	GAGTC	2 cut(s)	114, 433
ScrFI	CCNGG	3 cut(s)	192, 405, 777
SfaNI	GCATC	4 cut(s)	91, 361, 424, 640
SinI	GGWCC	1 cut(s)	598
SmiI	ATTTAAAT	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	4 cut(s)	11, 249, 481, 790
SsiI	CCGC	1 cut(s)	410
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	2 cut(s)	180, 531
StyD4I	CCNGG	3 cut(s)	190, 403, 775
StyI	CCWWGG	1 cut(s)	471
SwaI	ATTTAAAT	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	811
TaiI	ACGT	2 cut(s)	109, 402
TasI	AATT	4 cut(s)	11, 249, 481, 790
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	6 cut(s)	61, 278, 488, 524, 673, 802
Tru1I	TTAA	3 cut(s)	9, 366, 480
Tru9I	TTAA	3 cut(s)	9, 366, 480
TscAI	CASTG	3 cut(s)	58, 816, 823
TseI	GCWGC	1 cut(s)	833
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	3 cut(s)	58, 816, 823
VpaK11BI	GGWCC	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	11, 249
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	180, 531
ZraI	GACGTC	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.