Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

4741349 .. 4741882

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08121.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGACATCCCAGAAGTTGAGCATCAGACTATTATTAATGAAATATTTTACGCTGTTGAGATGGCAGACATCCCTGGGCCGCCTATTTATTGTATCATATGTGATGCGACTCTCAGATTGACAAGACCAATGTATAGACCCAGGGTCGTTAATTTAGAATGTCTGGAGAAAGTGAGACTTGATAGCTTGGAAGATTCTGCTAGACAAGAAGAGTGTGTTATTTGTAGAGAGGGTCTTGATCACTTTGAGGGTGTAGGAGGTATTGAGGACCAGCTGATGATTACTTGCTTGCCCTGCCGGCATCTTTATCATGGAGATTGCATTGTCAAATGGTCGGAGGTGAATCAGTTGTGTCCCTCGTGCCAAGAGCCAATGCCAACAATAGAGCAGGAAGAGGAGGAAGAGGTGGCTGCAGTTCGTGAGCCATCAAAACTACCAGGGCAGAAGCTGAATTGGCCTATGATTCTTACTGTGTCCACTGGTGGTATATTGGCTGCTATGCTGGCTTGCAGATTGTGGAAGCAAAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

178

Amino Acids

20.14

Weight (kDa)

4.69

Isoelectric Point (pI)

69.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	71 - 122	2.9e-07	Ring finger domain
zf-rbx1	PF12678	71 - 122	5.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AhdI	GACNNNNNGTC	1 cut(s)	143
AjnI	CCWGG	3 cut(s)	73, 140, 436
AluBI	AGCT	3 cut(s)	186, 274, 448
AluI	AGCT	3 cut(s)	186, 274, 448
Alw26I	GTCTC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	448
AoxI	GGCC	2 cut(s)	77, 455
ApeKI	GCWGC	2 cut(s)	410, 494
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	77, 268
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	397, 481
BccI	CCATC	2 cut(s)	55, 433
BciT130I	CCWGG	3 cut(s)	75, 142, 438
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	80, 411, 495
BlsI	GCNGC	3 cut(s)	81, 412, 496
Bme1390I	CCNGG	3 cut(s)	75, 142, 438
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	77, 268
BmrFI	CCNGG	3 cut(s)	75, 142, 438
BmsI	GCATC	3 cut(s)	31, 94, 310
BpmI	CTGGAG	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	73, 74, 140, 141, 437
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	484
BseBI	CCWGG	3 cut(s)	75, 142, 438
BseDI	CCNNGG	5 cut(s)	73, 74, 140, 141, 437
BseGI	GGATG	2 cut(s)	6, 69
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	397, 481
BshFI	GGCC	2 cut(s)	79, 457
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	79, 457
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	79, 457
BspCNI	CTCAG	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	5 cut(s)	73, 74, 140, 141, 437
BssMI	GATC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst2UI	CCWGG	3 cut(s)	75, 142, 438
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	3 cut(s)	204, 387, 396
BstC8I	GCNNGC	4 cut(s)	290, 299, 504, 508
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	6, 69
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	4 cut(s)	294, 298, 454, 503
BstNI	CCWGG	3 cut(s)	75, 142, 438
BstSCI	CCNGG	3 cut(s)	73, 140, 436
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	397, 481
BsuRI	GGCC	2 cut(s)	79, 457
BtsCI	GGATG	2 cut(s)	6, 69
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	4 cut(s)	290, 299, 504, 508
CaiI	CAGNNNCTG	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	77, 268
CviAII	CATG	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DriI	GACNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	204, 387, 396
Eam1105I	GACNNNNNGTC	1 cut(s)	143
EarI	CTCTTC	3 cut(s)	204, 387, 396
Eco47I	GGWCC	1 cut(s)	268
EcoRII	CCWGG	3 cut(s)	73, 140, 436
FaeI	CATG	1 cut(s)	314
FaiI	YATR	7 cut(s)	98, 100, 135, 312, 461, 488, 500
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	80, 411, 495
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	80, 411, 495
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	80, 411, 495
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	79, 457
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	4 cut(s)	109, 194, 343, 463
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	3 cut(s)	27, 116, 337
Hpy188III	TCNNGA	3 cut(s)	164, 236, 419
Hpy8I	GTNNAC	1 cut(s)	477
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	321, 413, 510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	294, 298, 454, 503
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	314
KroI	GCCGGC	1 cut(s)	297
KroNI	GCCGGC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	397, 481
LweI	GCATC	3 cut(s)	31, 94, 310
MaeI	CTAG	1 cut(s)	201
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	4 cut(s)	203, 221, 404, 413
MluCI	AATT	2 cut(s)	151, 451
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	9 cut(s)	223, 241, 251, 259, 331, 367, 388, 391, 397
MroNI	GCCGGC	1 cut(s)	297
MseI	TTAA	2 cut(s)	36, 150
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	3 cut(s)	75, 142, 438
MvaI	CCWGG	3 cut(s)	75, 142, 438
MwoI	GCNNNNNNNGC	4 cut(s)	294, 298, 454, 503
NaeI	GCCGGC	1 cut(s)	299
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	1 cut(s)	238
NgoMIV	GCCGGC	1 cut(s)	297
NlaIII	CATG	1 cut(s)	314
PasI	CCCWGGG	2 cut(s)	74, 141
PdiI	GCCGGC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	194, 343, 463
PkrI	GCNGC	3 cut(s)	81, 412, 496
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	73, 140, 436
PspGI	CCWGG	3 cut(s)	73, 140, 436
PspPI	GGNCC	2 cut(s)	77, 268
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	36, 150
SatI	GCNGC	3 cut(s)	80, 411, 495
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	77, 268
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	75, 142, 438
SetI	ASST	6 cut(s)	188, 262, 276, 342, 408, 450
SfaNI	GCATC	3 cut(s)	31, 94, 310
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	151, 451
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	73, 140, 436
TaaI	ACNGT	1 cut(s)	472
TasI	AATT	2 cut(s)	151, 451
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	194, 343, 463
Tru1I	TTAA	2 cut(s)	36, 150
Tru9I	TTAA	2 cut(s)	36, 150
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	2 cut(s)	410, 494
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	36
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.