Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

4026979 .. 4028113

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCCTTCAAAGTAAAAAAAGTACCCATCGACTTTGCAGTCTCAAGCAACGAGCGTGTTATCAGAATACTGCACTTCAAGATGACCGGAACATGCAGGGGTGATGATAATATTGAGTATACTGATATATGCACTCTAGCAGATCATCAACTTATTGTTGAGGTCCCTGAATTCGTGCTTTTATCTAAAAGGTGGAAGTATACAGCGTCTTTGGTTGAAGTTCTTACCAGAATGAAGGTCCCGATAGTTGAGCAGCCGCTTATCATTGATAAAGTATTTACCGAGGTTGAACGAGCTGACAACCCCCAGTGTGCTATTGCTTGCTTGATAAAGGATATCACCTTATTTTGTAAAACTGTCAAGATGGCTTATCGGTCAGAGTGTTTCGAAGAAGTGAGAATTGATAGTTTGGAAGATACTGAAAGACAAAAACAATGTGTTATTTGTAGGGAGAGCCTTGATCACGTTGAGGATATAGAAGAAGGGATTGATCGTAGTAGGTTGGTTCGCTTGCCGTGTTCCCATCTTTATCACGGTGATTGCCTTTCCAAATGGTTGCCCATGAGTCCGTTGTGTCCTTTGTGCCGATACGCATTGCCGGTTGTGGAACAGACAGCTGAGCCATCGTGGCCGCAGTTGCATTGGCCTATGCTGCTCACAGCATCTGCAGGTGGTATACTAACCGTCATACTGGTATGTAGATTATTGAAGAATACCCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

242

Amino Acids

27.64

Weight (kDa)

5.91

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	145 - 196	2e-10	Ring finger domain
zf-rbx1	PF12678	145 - 196	1.8e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
AasI	GACNNNNNNGTC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	659
AccI	GTMKAC	3 cut(s)	119, 200, 676
AciI	CCGC	2 cut(s)	257, 632
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	5 cut(s)	10, 79, 218, 290, 709
AluBI	AGCT	2 cut(s)	296, 617
AluI	AGCT	2 cut(s)	296, 617
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	629, 644
ApeKI	GCWGC	2 cut(s)	253, 652
ApoI	RAATTY	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	163, 238
AsuHPI	GGTGA	3 cut(s)	113, 331, 548
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	163, 238
BbvI	GCAGC	2 cut(s)	265, 639
BccI	CCATC	4 cut(s)	35, 358, 531, 631
BceAI	ACGGC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	659
BglI	GCCNNNNNGGC	1 cut(s)	628
BisI	GCNGC	4 cut(s)	254, 257, 632, 653
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	4 cut(s)	255, 258, 633, 654
Bme18I	GGWCC	2 cut(s)	163, 238
BmgT120I	GGNCC	2 cut(s)	163, 238
BmiI	GGNNCC	2 cut(s)	165, 240
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	1 cut(s)	301
Bpu1102I	GCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	307, 696
Bse3DI	GCAATG	1 cut(s)	593
BseDI	CCNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	307, 696
BseXI	GCAGC	2 cut(s)	265, 639
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	631, 646
BsiSI	CCGG	2 cut(s)	87, 599
BslFI	GGGAC	2 cut(s)	149, 224
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	149, 224
BsnI	GGCC	2 cut(s)	631, 646
Bsp119I	TTCGAA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	142, 460, 490
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	2 cut(s)	257, 632
BspANI	GGCC	2 cut(s)	631, 646
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	165, 240
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	659
BspT104I	TTCGAA	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	307, 696
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	142, 460, 490
BssNAI	GTATAC	3 cut(s)	120, 201, 677
Bst1107I	GTATAC	3 cut(s)	120, 201, 677
Bst4CI	ACNGT	3 cut(s)	358, 536, 685
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	322, 512
BstDEI	CTNAG	1 cut(s)	618
BstKTI	GATC	3 cut(s)	145, 463, 493
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	142, 460, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	628, 637, 652
BstNSI	RCATGY	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	265, 639
BstZ17I	GTATAC	3 cut(s)	120, 201, 677
BsuRI	GGCC	2 cut(s)	631, 646
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	2 cut(s)	322, 512
CaiI	CAGNNNCTG	1 cut(s)	665
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	163, 238
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	2 cut(s)	93, 562
CviJI	RGCY	8 cut(s)	256, 296, 368, 456, 617, 622, 631, 646
CviKI_1	RGCY	8 cut(s)	256, 296, 368, 456, 617, 622, 631, 646
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	144, 462, 492
DpnII	GATC	3 cut(s)	142, 460, 490
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	163, 238
EcoO109I	RGGNCCY	2 cut(s)	163, 238
EcoRI	GAATTC	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	2 cut(s)	96, 565
FaqI	GGGAC	2 cut(s)	149, 224
FatI	CATG	2 cut(s)	92, 561
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	3 cut(s)	119, 200, 676
Fnu4HI	GCNGC	4 cut(s)	254, 257, 632, 653
Fsp4HI	GCNGC	4 cut(s)	254, 257, 632, 653
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	4 cut(s)	254, 257, 632, 653
HaeIII	GGCC	2 cut(s)	631, 646
HapII	CCGG	2 cut(s)	87, 599
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	96, 565
HinfI	GANTC	1 cut(s)	565
HpaII	CCGG	2 cut(s)	87, 599
HphI	GGTGA	3 cut(s)	113, 331, 548
Hpy166II	GTNNAC	3 cut(s)	120, 201, 677
Hpy188I	TCNGA	2 cut(s)	65, 379
Hpy188III	TCNNGA	3 cut(s)	79, 241, 361
Hpy8I	GTNNAC	3 cut(s)	120, 201, 677
HpyAV	CCTTC	3 cut(s)	16, 229, 476
HpyCH4III	ACNGT	3 cut(s)	358, 536, 685
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	38, 73, 96, 132, 640, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	628, 637, 652
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	96, 565
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	142, 460, 490
LpnPI	CCDG	8 cut(s)	82, 100, 180, 241, 320, 612, 654, 677
Lsp1109I	GCAGC	2 cut(s)	265, 639
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	465
MalI	GATC	3 cut(s)	144, 462, 492
MboI	GATC	3 cut(s)	142, 460, 490
MboII	GAAGA	4 cut(s)	401, 425, 491, 721
MluCI	AATT	2 cut(s)	170, 399
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	3 cut(s)	154, 277, 463
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	2 cut(s)	87, 599
MwoI	GCNNNNNNNGC	3 cut(s)	628, 637, 652
NdeII	GATC	3 cut(s)	142, 460, 490
NlaIII	CATG	2 cut(s)	96, 565
NlaIV	GGNNCC	2 cut(s)	165, 240
NspI	RCATGY	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	659
PkrI	GCNGC	4 cut(s)	255, 258, 633, 654
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
PpuMI	RGGWCCY	2 cut(s)	163, 238
Psp5II	RGGWCCY	2 cut(s)	163, 238
PspN4I	GGNNCC	2 cut(s)	165, 240
PspPI	GGNCC	2 cut(s)	163, 238
PspPPI	RGGWCCY	2 cut(s)	163, 238
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SatI	GCNGC	4 cut(s)	254, 257, 632, 653
Sau3AI	GATC	3 cut(s)	142, 460, 490
Sau96I	GGNCC	2 cut(s)	163, 238
SchI	GAGTC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	2 cut(s)	163, 238
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	2 cut(s)	170, 399
SsiI	CCGC	2 cut(s)	257, 632
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	358, 536, 685
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	30, 387
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	170, 399
TauI	GCSGC	2 cut(s)	259, 634
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	2 cut(s)	253, 652
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	163, 238
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	96
XmiI	GTMKAC	3 cut(s)	119, 200, 676
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.