Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

5543018 .. 5545073

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGATAGCTGATGATCAATTGAGGGTGATAACTCGCTTTCCGTGCTCACACCTTTATCACAGAGCATGCATTGTTGGATGGCTGGAGAAGAATCACCTCTGTCCCTTGTGCCAATATCCTCTGGAACCTGAAGCAAGGATAAGGCCAACAAAATCCTCATGGGCACAGCATTGGCATATGCTGCTTATGGTGTCTGCTGGCAGTGTAATAACCGCGACACTTGTTTGTAGATATTGGAAGCGAAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

85

Amino Acids

9.85

Weight (kDa)

9.23

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	11 - 39	6.4e-09	Ring finger domain
zf-C3HC4_2	PF13923	11 - 38	2.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	13 - 38	2.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	15 - 39	1.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	218
AciI	CCGC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw21I	GWGCWC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	16, 40, 89
BaeGI	GKGCMC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	16
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	50, 169
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	129
BssMI	GATC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	70, 202
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 184
BstNSI	RCATGY	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	70, 202
CviAII	CATG	2 cut(s)	69, 162
CviJI	RGCY	3 cut(s)	11, 85, 148
CviKI_1	RGCY	3 cut(s)	11, 85, 148
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	74
FaeI	CATG	2 cut(s)	72, 165
FaiI	YATR	5 cut(s)	70, 163, 180, 182, 191
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	68, 161
FauNDI	CATATG	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	72, 165
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	3 cut(s)	16, 40, 89
Hpy188III	TCNNGA	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 184
Hsp92II	CATG	2 cut(s)	72, 165
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	71, 110, 144, 186
Lsp1109I	GCAGC	1 cut(s)	171
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	50, 169
MluCI	AATT	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	18, 110, 132, 169
Mph1103I	ATGCAT	1 cut(s)	74
MunI	CAATTG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	45, 184
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	72, 165
NlaIV	GGNNCC	1 cut(s)	129
NsiI	ATGCAT	1 cut(s)	74
NspI	RCATGY	1 cut(s)	72
PaeI	GCATGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	50, 169
SetI	ASST	4 cut(s)	13, 57, 102, 133
SphI	GCATGC	1 cut(s)	72
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	216
TasI	AATT	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	211
XceI	RCATGY	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.