Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

4108770 .. 4109570

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06931.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGGTCCTGATAGTTGAGCAGCCGCTTATCATTGATAAAGTATTTACCGAGGTGGAACGAGCTGACAACCTCCAGTGTGCTATTGCTTGCTTGATAAAGGATATCACCTTATTTTGTCAAACTGTCACGATGGCTTATCTGTCAGAGTGTTTCGAAGAAGTGAGAATTGATAGTTTAGAAGATACTGAAAGACAAAGACAATGTGTTATTTGTAGAGAGAGCCTTGATCACGTTGAGGATATAGAAGAAGGGATTGACCGTAGTCAGTTGGTTCGCTTGTTGTGTTCCCATCTTTATCACGGTGATTGCCTTTCCAAATGGTTGCCCATGAGTGCGTTGTGTCCTTTGTGCCGATACGCATTGCCGGTTGTGGAACAGACAATGCCGGTTACGATGCCGGTTGTGGAAAAGACGATGCCGGTTGTGGAACAGACATCTGAGCCATCATGGCCGCAGTTGCATTGGCCTATGCTGCTCACAGCATCTGCAGGTGGTATACTAACCGCCATACTGGTGTGTAGATTATTGAAGAAAACCCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

4.9

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	68 - 119	1.4e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	68 - 119	4.7e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	3 cut(s)	26, 455, 507
AcoI	YGGCCR	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	532
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	452, 467
ApeKI	GCWGC	2 cut(s)	22, 475
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	100, 317
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	34, 462
BccI	CCATC	3 cut(s)	127, 300, 454
BclI	TGATCA	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	482
BglI	GCCNNNNNGGC	1 cut(s)	451
BisI	GCNGC	4 cut(s)	23, 26, 455, 476
BlsI	GCNGC	4 cut(s)	24, 27, 456, 477
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	3 cut(s)	387, 408, 494
BoxI	GACNNNNGTC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	51
Bse118I	RCCGGY	4 cut(s)	367, 388, 400, 421
Bse1I	ACTGG	2 cut(s)	76, 519
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	76, 519
BseXI	GCAGC	2 cut(s)	34, 462
BshFI	GGCC	2 cut(s)	454, 469
BsiSI	CCGG	4 cut(s)	368, 389, 401, 422
BsnI	GGCC	2 cut(s)	454, 469
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	3 cut(s)	26, 455, 507
BspANI	GGCC	2 cut(s)	454, 469
BspCNI	CTCAG	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	493
BspMI	ACCTGC	1 cut(s)	482
BspT104I	TTCGAA	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	4 cut(s)	367, 388, 400, 421
BsrI	ACTGG	2 cut(s)	76, 519
BssAI	RCCGGY	4 cut(s)	367, 388, 400, 421
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	229
BssNAI	GTATAC	1 cut(s)	500
Bst1107I	GTATAC	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	127, 263, 305
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	451, 460, 475
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	34, 462
BstZ17I	GTATAC	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	454, 469
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	4 cut(s)	367, 388, 400, 421
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	2 cut(s)	331, 450
CviJI	RGCY	7 cut(s)	25, 65, 137, 225, 445, 454, 469
CviKI_1	RGCY	7 cut(s)	25, 65, 137, 225, 445, 454, 469
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	106
FaeI	CATG	2 cut(s)	334, 453
FaiI	YATR	6 cut(s)	245, 332, 451, 473, 500, 512
FatI	CATG	2 cut(s)	330, 449
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	23, 26, 455, 476
Fsp4HI	GCNGC	4 cut(s)	23, 26, 455, 476
GluI	GCNGC	4 cut(s)	23, 26, 455, 476
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	454, 469
HapII	CCGG	4 cut(s)	368, 389, 401, 422
Hin1II	CATG	2 cut(s)	334, 453
HpaII	CCGG	4 cut(s)	368, 389, 401, 422
HphI	GGTGA	2 cut(s)	100, 317
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	148, 442
Hpy188III	TCNNGA	2 cut(s)	10, 130
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	127, 263, 305
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	463, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	451, 460, 475
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	334, 453
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	8 cut(s)	23, 89, 381, 402, 414, 435, 477, 500
Lsp1109I	GCAGC	2 cut(s)	34, 462
LweI	GCATC	3 cut(s)	387, 408, 494
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	127, 391
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	170, 194, 260, 544
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	3 cut(s)	46, 83, 232
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	4 cut(s)	368, 389, 401, 422
MwoI	GCNNNNNNNGC	3 cut(s)	451, 460, 475
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	334, 453
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	482
PkrI	GCNGC	4 cut(s)	24, 27, 456, 477
PpuMI	RGGWCCY	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	515
SatI	GCNGC	4 cut(s)	23, 26, 455, 476
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	7 cut(s)	9, 57, 67, 75, 113, 237, 496
SfaNI	GCATC	3 cut(s)	387, 408, 494
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	26, 455, 507
TaaI	ACNGT	3 cut(s)	127, 263, 305
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	168
TauI	GCSGC	2 cut(s)	28, 457
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	22, 475
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.