Rorug07G0339900

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001335
Physical Location & Seq
Forward (+)
37422020 .. 37422814
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0339900.1

Sequence Viewer

Length: 717 bp
ATGATCAAGTTTATAGTAAGGGCAGAGCTGATGCCTAAATTATACCAAGAGTTTGAAACAATAGATGACGTTGCTGCTTTCTACAATAGATATGCAAAAGAAGCAGGGTTTAGTATTAGAAGTCATTCTAGTGCGACCATCAAAGATAATAAACAACTTATGAGGAAGAAGTATGTCTGTTATAAGCAAGGAGATTCCAAAGTTGAAGGAGAAAAACGTAAGAGAGGATTACCAAAAGTGGGTTGTAAAGCGAGAATTGCAGTTGTGAGAAAGAAGGAGTCTAGAAGATATGCAATCTCTGTATTTGTCGAGGGTCACAACCATCCATTAACAAGCCCGCCTAGAGTACATTTGTTGAGATCTCACCGTCGTGTTTCAGAAGTTAACACAGTTCCATCACAGCAACTAAGTTTGCGTGATCAATATAATTATAGAAGAACTTGTCGTGAAGAGAAGAAGGGGCATGATGGAGATCTACTGTACATGCATTTTCAGAATGAGAAAGAAAAAGATTCCTCTTTTGTCTATACAATGGAGTCAGATGAGGAAAACAGAGTAACACGGTGCTTTTGGGCTGACTCAATTTCAAGACGAGCTTACAGCTTTTATGGAGATGTAGTTATCTTTGATACTACATACAACACAAATCGGTATGGAATGATTTTTGCACCATTCACTAGTGTTAACAATCATCTTTGCTTGTGCATTGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

238

Amino Acids

27.98

Weight (kDa)

9.57

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 27 - 111 1.2e-20 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AciI CCGC 1 cut(s) 338
AfaI GTAC 2 cut(s) 348, 482
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 56, 206, 588
AhlI ACTAGT 1 cut(s) 677
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 3 cut(s) 28, 596, 603
AluI AGCT 3 cut(s) 28, 596, 603
ApeKI GCWGC 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 356
BbvI GCAGC 1 cut(s) 61
BccI CCATC 4 cut(s) 146, 330, 403, 461
BclI TGATCA 2 cut(s) 3, 418
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 4 cut(s) 129, 282, 342, 678
BglII AGATCT 2 cut(s) 359, 472
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmsI GCATC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 471
BseGI GGATG 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 4 cut(s) 3, 359, 418, 472
BspACI CCGC 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 480
BssMI GATC 4 cut(s) 3, 359, 418, 472
Bst4CI ACNGT 4 cut(s) 368, 391, 480, 564
Bst6I CTCTTC 1 cut(s) 444
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 407
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 4 cut(s) 6, 362, 421, 475
BstMBI GATC 4 cut(s) 3, 359, 418, 472
BstMWI GCNNNNNNNGC 2 cut(s) 101, 257
BstNSI RCATGY 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 359, 472
BstYI RGATCY 2 cut(s) 359, 472
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 338
Csp6I GTAC 2 cut(s) 347, 481
CviAII CATG 2 cut(s) 464, 484
CviJI RGCY 5 cut(s) 28, 336, 575, 596, 603
CviKI_1 RGCY 5 cut(s) 28, 336, 575, 596, 603
CviQI GTAC 2 cut(s) 347, 481
DdeI CTNAG 1 cut(s) 407
DpnI GATC 4 cut(s) 5, 361, 420, 474
DpnII GATC 4 cut(s) 3, 359, 418, 472
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 489
FaeI CATG 2 cut(s) 467, 487
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FatI CATG 2 cut(s) 463, 483
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 2 cut(s) 3, 418
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 4 cut(s) 129, 282, 342, 678
GluI GCNGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 467, 487
HincII GTYRAC 2 cut(s) 385, 685
HindII GTYRAC 2 cut(s) 385, 685
HinfI GANTC 5 cut(s) 194, 278, 512, 536, 578
HpaI GTTAAC 2 cut(s) 385, 685
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 385, 685
Hpy188I TCNGA 3 cut(s) 379, 495, 541
Hpy188III TCNNGA 3 cut(s) 282, 446, 588
Hpy8I GTNNAC 2 cut(s) 385, 685
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 3 cut(s) 200, 268, 451
HpyCH4III ACNGT 4 cut(s) 368, 391, 480, 564
HpyCH4IV ACGT 2 cut(s) 69, 217
HpyCH4V TGCA 6 cut(s) 95, 260, 293, 487, 668, 705
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 257
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 2 cut(s) 69, 217
Hsp92II CATG 2 cut(s) 467, 487
Ksp22I TGATCA 2 cut(s) 3, 418
KspAI GTTAAC 2 cut(s) 385, 685
Kzo9I GATC 4 cut(s) 3, 359, 418, 472
LpnPI CCDG 1 cut(s) 90
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 21
MaeI CTAG 4 cut(s) 129, 282, 342, 678
MaeII ACGT 2 cut(s) 69, 217
MaeIII GTNAC 2 cut(s) 314, 556
MalI GATC 4 cut(s) 5, 361, 420, 474
MboI GATC 4 cut(s) 3, 359, 418, 472
MboII GAAGA 5 cut(s) 178, 297, 447, 461, 466
MflI RGATCY 2 cut(s) 359, 472
MluCI AATT 4 cut(s) 38, 255, 427, 582
MlyI GAGTC 3 cut(s) 287, 545, 572
MnlI CCTC 5 cut(s) 156, 218, 304, 526, 538
Mph1103I ATGCAT 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 4 cut(s) 329, 384, 684, 711
MslI CAYNNNNRTG 2 cut(s) 129, 369
MwoI GCNNNNNNNGC 2 cut(s) 101, 257
NdeII GATC 4 cut(s) 3, 359, 418, 472
NlaIII CATG 2 cut(s) 467, 487
NmuCI GTSAC 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 1 cut(s) 487
OliI CACNNNNGTG 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 194, 512
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 3 cut(s) 286, 544, 572
PpsI GAGTC 3 cut(s) 286, 544, 572
PsiI TTATAA 1 cut(s) 183
PsuI RGATCY 2 cut(s) 359, 472
RsaI GTAC 2 cut(s) 348, 482
RsaNI GTAC 2 cut(s) 347, 481
RseI CAYNNNNRTG 2 cut(s) 129, 369
SaqAI TTAA 4 cut(s) 329, 384, 684, 711
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 3, 359, 418, 472
SchI GAGTC 3 cut(s) 287, 545, 572
SetI ASST 5 cut(s) 30, 72, 220, 598, 605
SfaNI GCATC 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 129, 369
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 4 cut(s) 38, 255, 427, 582
SsiI CCGC 1 cut(s) 338
SspMI CTAG 4 cut(s) 129, 282, 342, 678
TaaI ACNGT 4 cut(s) 368, 391, 480, 564
TaiI ACGT 2 cut(s) 72, 220
TaqI TCGA 1 cut(s) 309
TasI AATT 4 cut(s) 38, 255, 427, 582
TatI WGTACW 2 cut(s) 346, 480
TfiI GAWTC 2 cut(s) 194, 512
Tru1I TTAA 4 cut(s) 329, 384, 684, 711
Tru9I TTAA 4 cut(s) 329, 384, 684, 711
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 314
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 4 cut(s) 129, 282, 342, 678
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.