Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

4090822 .. 4093291

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCCACCGAGCAGAACTTGTTTCTTACCAGCGTCTATCAAAGTAAAAATACACCCGTTAACTTTGTAGTCCCAAGGAACGAGCGTGTAATCAGAATAGTGCACTTCAAGATGACCGCAACACGCTGGGGTGATGATGATGATTATGACTATAATGATATATGCACTCTAGCAGATTATCAAGTTGTTGTCGAGGTCCCTGAATTCCTGCTTTTATCTAGAAGGCACAGACATGTAGCGTTTTTGGTTGGAGTTCTTACCAGAATGAAGGTCCCGATAGTTGAGCAACCCTCTATCATTGATAAAGTATTTATTGAGGTTGAACGAGCTGACAACCCCCAGCTTGCTATTGCTTGCTTCATAAAGGATATCACCATATTCCCTCGAATGGTCAACATAGCTTATCGGTCAGAGTGTTTCGAAGGAGTGAGAATTGATAGTTTGGAAGATACTGATAGACGAAAACAGTGTGTTATTTGTAGAGAGAGCCTTGATCACGTTGAGGATATAGAAGAAGGGATTGATCGTAGTCAGTTGGTTCGCTTGCCGTGTTCCCATCTTTATCACGGTGATTGCCTTTCCAAATGGTTGCCCATGAGTGCGTTGTGTCCTTTGTGCCGATACGCATTGCCGGTTGAACAGACGATGCCGTTTGTGGAACAAACGATGCCGGTTGTGGAACAGATAATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAGACAGCTGAGCCAGTGTGGCCGCAGTTGCATTGGCCTATGCTGCTCACAGCATCTGCAGGTGGTATACTAACCGCCATACTGGTATGTAGATTATGGAAGAAAACCCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

280

Amino Acids

32.16

Weight (kDa)

5.32

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	156 - 207	4.9e-10	Ring finger domain
zf-rbx1	PF12678	156 - 207	2.5e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	3 cut(s)	117, 746, 798
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	109, 323, 638
AluBI	AGCT	4 cut(s)	329, 343, 401, 731
AluI	AGCT	4 cut(s)	329, 343, 401, 731
Alw21I	GWGCWC	1 cut(s)	105
Alw44I	GTGCAC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	743, 758
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	766
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	196, 271
AsuHPI	GGTGA	3 cut(s)	143, 364, 581
AsuII	TTCGAA	1 cut(s)	420
AvaII	GGWCC	2 cut(s)	196, 271
BaeGI	GKGCMC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	753
BccI	CCATC	1 cut(s)	564
BceAI	ACGGC	2 cut(s)	532, 634
BclI	TGATCA	1 cut(s)	493
BfaI	CTAG	2 cut(s)	170, 219
BfmI	CTRYAG	1 cut(s)	780
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	2 cut(s)	746, 767
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	2 cut(s)	747, 768
Bme18I	GGWCC	2 cut(s)	196, 271
BmgT120I	GGNCC	2 cut(s)	196, 271
BmiI	GGNNCC	2 cut(s)	198, 273
BmsI	GCATC	4 cut(s)	636, 657, 699, 785
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu1102I	GCTNAGC	1 cut(s)	732
Bpu14I	TTCGAA	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse118I	RCCGGY	4 cut(s)	631, 670, 691, 712
Bse1I	ACTGG	2 cut(s)	737, 810
Bse3DI	GCAATG	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	2 cut(s)	737, 810
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	753
BseYI	CCCAGC	2 cut(s)	126, 339
BshFI	GGCC	2 cut(s)	745, 760
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	4 cut(s)	632, 671, 692, 713
BslFI	GGGAC	3 cut(s)	56, 182, 257
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmFI	GGGAC	3 cut(s)	56, 182, 257
BsnI	GGCC	2 cut(s)	745, 760
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	493, 523
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	3 cut(s)	117, 746, 798
BspANI	GGCC	2 cut(s)	745, 760
BspCNI	CTCAG	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	198, 273
BspMAI	CTGCAG	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	773
BspT104I	TTCGAA	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	626
BsrFI	RCCGGY	4 cut(s)	631, 670, 691, 712
BsrI	ACTGG	2 cut(s)	737, 810
BssAI	RCCGGY	4 cut(s)	631, 670, 691, 712
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	493, 523
BssNAI	GTATAC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	791
Bst4CI	ACNGT	2 cut(s)	468, 569
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	345, 355, 545
BstDEI	CTNAG	1 cut(s)	732
BstKTI	GATC	2 cut(s)	496, 526
BstMBI	GATC	2 cut(s)	493, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	742, 751, 766
BstNSI	RCATGY	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	780
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	753
BstZ17I	GTATAC	1 cut(s)	791
BsuRI	GGCC	2 cut(s)	745, 760
BtgZI	GCGATG	1 cut(s)	722
BtsIMutI	CAGTG	2 cut(s)	473, 744
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	3 cut(s)	345, 355, 545
CaiI	CAGNNNCTG	1 cut(s)	779
Cfr10I	RCCGGY	4 cut(s)	631, 670, 691, 712
Cfr13I	GGNCC	2 cut(s)	196, 271
CseI	GACGC	1 cut(s)	22
CviAII	CATG	2 cut(s)	233, 595
CviJI	RGCY	8 cut(s)	329, 343, 401, 489, 731, 736, 745, 760
CviKI_1	RGCY	8 cut(s)	329, 343, 401, 489, 731, 736, 745, 760
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	2 cut(s)	495, 525
DpnII	GATC	2 cut(s)	493, 523
EaeI	YGGCCR	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	196, 271
EcoO109I	RGGNCCY	2 cut(s)	196, 271
EcoRI	GAATTC	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	236, 598
FaqI	GGGAC	3 cut(s)	56, 182, 257
FatI	CATG	2 cut(s)	232, 594
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	746, 767
Fsp4HI	GCNGC	2 cut(s)	746, 767
FspBI	CTAG	2 cut(s)	170, 219
GluI	GCNGC	2 cut(s)	746, 767
GsaI	CCCAGC	2 cut(s)	130, 343
HaeIII	GGCC	2 cut(s)	745, 760
HapII	CCGG	4 cut(s)	632, 671, 692, 713
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	236, 598
HincII	GTYRAC	2 cut(s)	61, 394
HindII	GTYRAC	2 cut(s)	61, 394
HpaI	GTTAAC	1 cut(s)	61
HpaII	CCGG	4 cut(s)	632, 671, 692, 713
HphI	GGTGA	3 cut(s)	143, 364, 581
Hpy166II	GTNNAC	5 cut(s)	6, 61, 103, 394, 791
Hpy188I	TCNGA	2 cut(s)	95, 412
Hpy188III	TCNNGA	3 cut(s)	109, 219, 274
Hpy8I	GTNNAC	5 cut(s)	6, 61, 103, 394, 791
HpyAV	CCTTC	4 cut(s)	216, 262, 416, 509
HpyCH4III	ACNGT	2 cut(s)	468, 569
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	103, 165, 754, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	742, 751, 766
HpyF3I	CTNAG	1 cut(s)	732
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	236, 598
Ksp22I	TGATCA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	493, 523
Lsp1109I	GCAGC	1 cut(s)	753
LweI	GCATC	4 cut(s)	636, 657, 699, 785
MaeI	CTAG	2 cut(s)	170, 219
MaeII	ACGT	1 cut(s)	498
MalI	GATC	2 cut(s)	495, 525
MboI	GATC	2 cut(s)	493, 523
MboII	GAAGA	3 cut(s)	458, 524, 835
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	203, 432
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	187, 301, 310, 393, 496
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	4 cut(s)	632, 671, 692, 713
MwoI	GCNNNNNNNGC	3 cut(s)	742, 751, 766
NdeII	GATC	2 cut(s)	493, 523
NlaIII	CATG	2 cut(s)	236, 598
NlaIV	GGNNCC	2 cut(s)	198, 273
NspI	RCATGY	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	773
PciI	ACATGT	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	747, 768
PpuMI	RGGWCCY	2 cut(s)	196, 271
PscI	ACATGT	1 cut(s)	232
Psp5II	RGGWCCY	2 cut(s)	196, 271
PspFI	CCCAGC	2 cut(s)	126, 339
PspN4I	GGNNCC	2 cut(s)	198, 273
PspPI	GGNCC	2 cut(s)	196, 271
PspPPI	RGGWCCY	2 cut(s)	196, 271
PstI	CTGCAG	1 cut(s)	784
PstNI	CAGNNNCTG	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	746, 767
Sau3AI	GATC	2 cut(s)	493, 523
Sau96I	GGNCC	2 cut(s)	196, 271
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	9 cut(s)	198, 273, 321, 331, 345, 403, 501, 733, 787
SfaNI	GCATC	4 cut(s)	636, 657, 699, 785
SfcI	CTRYAG	1 cut(s)	780
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	2 cut(s)	196, 271
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	203, 432
SsiI	CCGC	3 cut(s)	117, 746, 798
SspMI	CTAG	2 cut(s)	170, 219
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	468, 569
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	192, 385, 420
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	203, 432
TauI	GCSGC	1 cut(s)	748
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	473, 744
TseI	GCWGC	1 cut(s)	766
TspDTI	ATGAA	2 cut(s)	281, 349
TspRI	CASTG	2 cut(s)	473, 744
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	196, 271
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	218
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	2 cut(s)	170, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.