Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

10288939 .. 10290857

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATTATTCGCTTGTTCTGCTCACATCTTTATCACGAAGATTGCATTTTCCAATGGCTGGTGACGAGTCCGTTATGCCCCATGTGCCGATACTCAGTGCCGGTTGTGGAACAGGCAATGCCGGTTGTGGAACAGGCAATGCCGGTTGTGGAACAGGCAATGCCAGTTGTGGAACAGGCAGCGGAGCTATCAAAACCATCATGGCGGCAGCTGCATTGGCCTATGCTGCTCACAGCGTCTGCGGGTGGTATATTAACTGCTTTGCTGGTATGTAGATTATTGAAGCAAAGGCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

99

Amino Acids

11.26

Weight (kDa)

6.8

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	3 - 30	2.2e-08	Ring finger domain
zf-rbx1	PF12678	7 - 30	1.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	3 cut(s)	182, 205, 242
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	2 cut(s)	187, 211
AluI	AGCT	2 cut(s)	187, 211
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	4 cut(s)	179, 208, 211, 226
AsuHPI	GGTGA	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	191, 198, 213, 220
BccI	CCATC	1 cut(s)	205
BisI	GCNGC	5 cut(s)	180, 206, 209, 212, 227
BlsI	GCNGC	5 cut(s)	181, 207, 210, 213, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	3 cut(s)	100, 121, 142
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	3 cut(s)	123, 144, 165
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	3 cut(s)	123, 144, 165
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	191, 198, 213, 220
BshFI	GGCC	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	101, 122, 143
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	1 cut(s)	220
BspACI	CCGC	3 cut(s)	182, 205, 242
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	107
BsrDI	GCAATG	3 cut(s)	123, 144, 165
BsrFI	RCCGGY	3 cut(s)	100, 121, 142
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	3 cut(s)	100, 121, 142
BstDEI	CTNAG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 84, 211, 217, 226
BstV1I	GCAGC	4 cut(s)	191, 198, 213, 220
BsuRI	GGCC	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr10I	RCCGGY	3 cut(s)	100, 121, 142
CseI	GACGC	1 cut(s)	225
CviAII	CATG	2 cut(s)	82, 201
CviJI	RGCY	4 cut(s)	58, 187, 211, 220
CviKI_1	RGCY	4 cut(s)	58, 187, 211, 220
DdeI	CTNAG	1 cut(s)	94
FaeI	CATG	2 cut(s)	85, 204
FaiI	YATR	6 cut(s)	76, 83, 202, 224, 251, 271
FatI	CATG	2 cut(s)	81, 200
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	180, 206, 209, 212, 227
Fsp4HI	GCNGC	5 cut(s)	180, 206, 209, 212, 227
GluI	GCNGC	5 cut(s)	180, 206, 209, 212, 227
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	3 cut(s)	101, 122, 143
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	85, 204
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	101, 122, 143
HphI	GGTGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	45, 214
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 84, 211, 217, 226
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	85, 204
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	4 cut(s)	191, 198, 213, 220
MaeIII	GTNAC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	182, 211
MspI	CCGG	3 cut(s)	101, 122, 143
MwoI	GCNNNNNNNGC	5 cut(s)	18, 84, 211, 217, 226
NlaIII	CATG	2 cut(s)	85, 204
NmuCI	GTSAC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	5 cut(s)	181, 207, 210, 213, 228
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	5 cut(s)	180, 206, 209, 212, 227
SchI	GAGTC	1 cut(s)	76
SetI	ASST	2 cut(s)	189, 213
SsiI	CCGC	3 cut(s)	182, 205, 242
TauI	GCSGC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	4 cut(s)	179, 208, 211, 226
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.