Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029757.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 303

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029757.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 302 bp

atgtccaccgaggagaaattgtttcttagcagtgtgtttcaaagaaaaaatgtatcccttgactttgcagtcccaagcaacaagcgtgtgatcagaatatcgcacgccatgctgactggaacctgctctggtgatgcccttacagacattgcctatcatgatatatgtactctagcagaccatcaagttattgtctcagtccctgacttcctgcttttatccgtaaggcaatattatacagagaagatggctgaaattcttaccaaattgaaggtcccagaatttgagcaaccacctatcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

5.84

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	255, 281
AfaI	GTAC	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	41, 271
Alw26I	GTCTC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	255, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	274
BccI	CCATC	2 cut(s)	189, 241
BciVI	GTATCC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	121, 276
BmsI	GCATC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	26
BslFI	GGGAC	3 cut(s)	56, 185, 260
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	3 cut(s)	56, 185, 260
Bsp143I	GATC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	121, 276
BspMI	ACCTGC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	26, 196
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	109, 158
CviJI	RGCY	1 cut(s)	251
CviKI_1	RGCY	1 cut(s)	251
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	26, 196
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	274
FaeI	CATG	2 cut(s)	112, 161
FaiI	YATR	5 cut(s)	110, 159, 164, 166, 237
FaqI	GGGAC	3 cut(s)	56, 185, 260
FatI	CATG	2 cut(s)	108, 157
FbaI	TGATCA	1 cut(s)	90
FspBI	CTAG	1 cut(s)	173
Hin1II	CATG	2 cut(s)	112, 161
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	26, 196
Hsp92II	CATG	2 cut(s)	112, 161
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	102, 114, 136, 216, 224, 291
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	173
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	4 cut(s)	17, 255, 266, 281
MnlI	CCTC	1 cut(s)	4
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	112, 161
NlaIV	GGNNCC	2 cut(s)	121, 276
PagI	TCATGA	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	121, 276
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	274
SetI	ASST	3 cut(s)	125, 276, 298
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	4 cut(s)	17, 255, 266, 281
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	1 cut(s)	173
TasI	AATT	4 cut(s)	17, 255, 266, 281
TatI	WGTACW	1 cut(s)	167
TscAI	CASTG	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	255, 281
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.