Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

10452059 .. 10454208

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCCACCGAGATGTATTTTTGTAGCAATGTGTTTCAAAGAAAAGATGTATCCCTCGACTCTGCAGTCCAAAGCAACTGGCGCGTGATCAGAATAACGCACGCCATGATGACGGGAACCTACTGGGGTGATGCCACTACAGACGTTGGCATTCATGATATATGTACTCTAGGGGACGAAGAAATTGTTGTCGGACTCCCTGAATTCCTATCCGAAAGGCAAAAGTATACAGAGAAGCTGGCTAAAGTTCTTACTGAAATGAGAGTCCCAGAATTTGAGCAACCACCTATCATTGATAAACTATTTACGGCGGTTGAACTGGCTGACAACCCCGACTGGCCTATTATTGCTTGCCACATAATGGACGTCACCTTATTTCATCAAATGATCAGTGATAGGTGCACGGCCTATCAATTAGAGTGTTTTGAGAAAGTGAGAATTGATAGTTTGGAAGATATTGTTAGACAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAGGGTTTAGATGAAGGGATTGATCGTGTTGTGGAACAGGCGATGCTGCTTGTTGAACAGGAGATGCCGGTTGTGGAACAGGTGATGTCAGTTGTGGAACAGGCTATTGAAGCATCATGGCGGCATCTGCATTGGCCTATTCTGCTCACAGCATCTGCGGGTGGTATATTAACTGCTATGCTGGCCGAGACTAAGCTGCTGGCTAGTAGGAAAACAGCGAAGAATAGAACTCTCCCAGTACAAGCCTCCAAGGGTTATTTGACTTTTTCCCTCCATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

262

Amino Acids

29.78

Weight (kDa)

4.86

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	311, 628, 665
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	203, 272
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	166, 747
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	38, 317, 563, 617
AluBI	AGCT	2 cut(s)	238, 703
AluI	AGCT	2 cut(s)	238, 703
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	689
Alw44I	GTGCAC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	338, 405, 641, 690
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	553, 703
ApoI	RAATTY	2 cut(s)	203, 272
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	140, 361, 601
BaeGI	GKGCMC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	540, 690
BceAI	ACGGC	2 cut(s)	324, 420
BciVI	GTATCC	1 cut(s)	61
BclI	TGATCA	3 cut(s)	87, 387, 499
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	2 cut(s)	170, 711
BfmI	CTRYAG	2 cut(s)	63, 138
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	554, 629, 704
BlsI	GCNGC	3 cut(s)	555, 630, 705
BmiI	GGNNCC	1 cut(s)	118
BmrI	ACTGGG	2 cut(s)	133, 737
BmsI	GCATC	6 cut(s)	121, 540, 561, 629, 640, 668
BmuI	ACTGGG	2 cut(s)	133, 737
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	756
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	5 cut(s)	83, 128, 324, 341, 743
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	5 cut(s)	83, 128, 324, 341, 743
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	540, 690
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	340, 407, 643, 692
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	188, 251
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	2 cut(s)	188, 251
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	4 cut(s)	340, 407, 643, 692
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	4 cut(s)	87, 387, 499, 529
BspACI	CCGC	3 cut(s)	311, 628, 665
BspANI	GGCC	4 cut(s)	340, 407, 643, 692
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	5 cut(s)	83, 128, 324, 341, 743
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	756
BssMI	GATC	4 cut(s)	87, 387, 499, 529
BssNAI	GTATAC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	756
Bst1107I	GTATAC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	366
BstC8I	GCNNGC	5 cut(s)	102, 240, 352, 690, 708
BstDEI	CTNAG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	90, 390, 502, 532
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	4 cut(s)	87, 387, 499, 529
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 617, 634, 649, 689
BstSFI	CTRYAG	2 cut(s)	63, 138
BstSLI	GKGCMC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	540, 690
BstZ17I	GTATAC	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	4 cut(s)	340, 407, 643, 692
BtgZI	GCGATG	1 cut(s)	563
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	5 cut(s)	102, 240, 352, 690, 708
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	165, 746
CviAII	CATG	3 cut(s)	106, 155, 624
CviQI	GTAC	2 cut(s)	165, 746
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	4 cut(s)	89, 389, 501, 531
DpnII	GATC	4 cut(s)	87, 387, 499, 529
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	756
EcoRI	GAATTC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	3 cut(s)	109, 158, 627
FaiI	YATR	9 cut(s)	107, 156, 161, 163, 228, 359, 625, 674, 686
FaqI	GGGAC	2 cut(s)	188, 251
FatI	CATG	3 cut(s)	105, 154, 623
FauI	CCCGC	1 cut(s)	658
FbaI	TGATCA	3 cut(s)	87, 387, 499
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	554, 629, 704
Fsp4HI	GCNGC	3 cut(s)	554, 629, 704
FspBI	CTAG	2 cut(s)	170, 711
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	3 cut(s)	554, 629, 704
HaeIII	GGCC	4 cut(s)	340, 407, 643, 692
HapII	CCGG	1 cut(s)	575
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	109, 158, 627
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	59, 195, 264
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	3 cut(s)	140, 361, 601
Hpy166II	GTNNAC	3 cut(s)	6, 228, 402
Hpy188I	TCNGA	3 cut(s)	92, 194, 214
Hpy188III	TCNNGA	2 cut(s)	155, 786
Hpy8I	GTNNAC	3 cut(s)	6, 228, 402
HpyAV	CCTTC	1 cut(s)	515
HpyCH4IV	ACGT	2 cut(s)	144, 366
HpyCH4V	TGCA	3 cut(s)	65, 402, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 617, 634, 649, 689
HpyF3I	CTNAG	1 cut(s)	699
HpySE526I	ACGT	2 cut(s)	144, 366
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	109, 158, 627
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	3 cut(s)	87, 387, 499
Kzo9I	GATC	4 cut(s)	87, 387, 499, 529
Lsp1109I	GCAGC	2 cut(s)	540, 690
LweI	GCATC	6 cut(s)	121, 540, 561, 629, 640, 668
MaeI	CTAG	2 cut(s)	170, 711
MaeII	ACGT	2 cut(s)	144, 366
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	4 cut(s)	89, 389, 501, 531
MboI	GATC	4 cut(s)	87, 387, 499, 529
MboII	GAAGA	3 cut(s)	191, 464, 739
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	5 cut(s)	183, 203, 272, 413, 438
MlyI	GAGTC	3 cut(s)	53, 189, 273
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	65, 502, 763, 788
MseI	TTAA	1 cut(s)	677
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	150
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	81, 617, 634, 649, 689
NdeII	GATC	4 cut(s)	87, 387, 499, 529
NlaIII	CATG	3 cut(s)	109, 158, 627
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	555, 630, 705
PleI	GAGTC	3 cut(s)	53, 189, 272
PpsI	GAGTC	3 cut(s)	53, 189, 272
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	166, 747
RsaNI	GTAC	2 cut(s)	165, 746
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	3 cut(s)	554, 629, 704
Sau3AI	GATC	4 cut(s)	87, 387, 499, 529
SchI	GAGTC	3 cut(s)	53, 189, 273
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	9 cut(s)	122, 147, 240, 289, 369, 374, 401, 591, 705
SfaNI	GCATC	6 cut(s)	121, 540, 561, 629, 640, 668
SfcI	CTRYAG	2 cut(s)	63, 138
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	183, 203, 272, 413, 438
SsiI	CCGC	3 cut(s)	311, 628, 665
SspMI	CTAG	2 cut(s)	170, 711
StyI	CCWWGG	1 cut(s)	756
TaiI	ACGT	2 cut(s)	147, 369
TaqI	TCGA	1 cut(s)	57
TasI	AATT	5 cut(s)	183, 203, 272, 413, 438
TatI	WGTACW	2 cut(s)	164, 745
TauI	GCSGC	1 cut(s)	631
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	553, 703
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	143, 368, 534
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	400
XapI	RAATTY	2 cut(s)	203, 272
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	2 cut(s)	170, 711
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.