Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

4122414 .. 4125296

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06960.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGGTCCCGATAGTTGAGCAGCCGCTTATCATTGATAAAGTATTTACCGAGGTTGAACGAGCTGACAACCCCCAATGTGCTATTGCTTGCTTGATAAAGGATATCACCTTATTTTGTCACACTGTCAAGATGGCTTATCGGTCAGAGTGTTTCGAAGAAGTGAGAATTGATAGCTTGGAAGATACTGAAAGACAAAAACAATGTGTTATTTGTAGAGAGAGCCTTGATCACGTTGAGGACATAGAGGAGGGGATTGGTCGTAGTCCGTTGGTTCGCTTGCCGTGTTCCCATCTTTATCACGGTGATTGTCTTTCCAAATGGTTGCCCATGAGTGCGTTGTGTCCTTTGTGCCGATACACATTGCCGGTTGTGGAACAGACGGTGCCGGTTGTGGAACAGACGGTGCCGGTTGTGGAACAGACGGTGCCGGTTGTGGAACAGACGGTGCCGGTTGTGGAGCAGACGGTGCCGGTTGTGGAGCAGACAGCTGATGAGCCATCGTGGCCGCAGTTGCATTGGCCTATGCTGCTCACAGCATCTGCAGGTGGTATATTAACTGCTATACTGATATGTAGATTATTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

197

Amino Acids

22.06

Weight (kDa)

4.8

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	154 - 205	2.3e-10	Ring finger domain
zf-rbx1	PF12678	154 - 205	1.7e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	536
AccB1I	GGYRCC	5 cut(s)	385, 406, 427, 448, 469
AciI	CCGC	2 cut(s)	26, 509
AcoI	YGGCCR	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	59, 586
AluBI	AGCT	3 cut(s)	65, 177, 491
AluI	AGCT	3 cut(s)	65, 177, 491
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	506, 521
ApeKI	GCWGC	2 cut(s)	22, 529
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	100, 317
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	5 cut(s)	385, 406, 427, 448, 469
BbvI	GCAGC	2 cut(s)	34, 516
BccI	CCATC	3 cut(s)	127, 300, 508
BceAI	ACGGC	1 cut(s)	268
BclI	TGATCA	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	536
BglI	GCCNNNNNGGC	1 cut(s)	505
BisI	GCNGC	4 cut(s)	23, 26, 509, 530
BlsI	GCNGC	4 cut(s)	24, 27, 510, 531
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	6 cut(s)	9, 387, 408, 429, 450, 471
BmsI	GCATC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	51
Bse118I	RCCGGY	6 cut(s)	367, 388, 409, 430, 451, 472
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	34, 516
BshFI	GGCC	2 cut(s)	508, 523
BshNI	GGYRCC	5 cut(s)	385, 406, 427, 448, 469
BsiSI	CCGG	6 cut(s)	368, 389, 410, 431, 452, 473
BsnI	GGCC	2 cut(s)	508, 523
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	2 cut(s)	26, 509
BspANI	GGCC	2 cut(s)	508, 523
BspLI	GGNNCC	6 cut(s)	9, 387, 408, 429, 450, 471
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	536
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	5 cut(s)	385, 406, 427, 448, 469
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	6 cut(s)	367, 388, 409, 430, 451, 472
BssAI	RCCGGY	6 cut(s)	367, 388, 409, 430, 451, 472
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	7 cut(s)	127, 305, 385, 406, 427, 448, 469
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	91, 281
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	469, 505, 514, 529
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	34, 516
BsuRI	GGCC	2 cut(s)	508, 523
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	91, 281
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr10I	RCCGGY	6 cut(s)	367, 388, 409, 430, 451, 472
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	9 cut(s)	25, 65, 137, 177, 225, 491, 499, 508, 523
CviKI_1	RGCY	9 cut(s)	25, 65, 137, 177, 225, 491, 499, 508, 523
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	106
FaeI	CATG	1 cut(s)	334
FaiI	YATR	6 cut(s)	245, 332, 527, 554, 566, 574
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	23, 26, 509, 530
Fsp4HI	GCNGC	4 cut(s)	23, 26, 509, 530
GluI	GCNGC	4 cut(s)	23, 26, 509, 530
HaeIII	GGCC	2 cut(s)	508, 523
HapII	CCGG	6 cut(s)	368, 389, 410, 431, 452, 473
Hin1II	CATG	1 cut(s)	334
HpaII	CCGG	6 cut(s)	368, 389, 410, 431, 452, 473
HphI	GGTGA	2 cut(s)	100, 317
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	10, 130
HpyCH4III	ACNGT	7 cut(s)	127, 305, 385, 406, 427, 448, 469
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	517, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	469, 505, 514, 529
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	460, 481
LpnPI	CCDG	7 cut(s)	381, 402, 423, 444, 465, 486, 531
Lsp1109I	GCAGC	2 cut(s)	34, 516
LweI	GCATC	1 cut(s)	548
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	170, 194
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	4 cut(s)	46, 232, 241, 244
MseI	TTAA	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	6 cut(s)	368, 389, 410, 431, 452, 473
MwoI	GCNNNNNNNGC	4 cut(s)	469, 505, 514, 529
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	6 cut(s)	9, 387, 408, 429, 450, 471
NmuCI	GTSAC	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	24, 27, 510, 531
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspN4I	GGNNCC	6 cut(s)	9, 387, 408, 429, 450, 471
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	4 cut(s)	23, 26, 509, 530
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	8 cut(s)	9, 57, 67, 113, 179, 237, 493, 550
SfaNI	GCATC	1 cut(s)	548
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	26, 509
TaaI	ACNGT	7 cut(s)	127, 305, 385, 406, 427, 448, 469
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	156
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	168
TauI	GCSGC	2 cut(s)	28, 511
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	22, 529
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.