Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

9545490 .. 9546308

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTATTTTTGTAGCAATGTGTTTCAAAGAAAAGATGTATCCCTCGACTCTGCAGTCCAAAGCAACTGGCGCGTGATCAGAATAACGCACGCCATGATGACGGGAACCTACTGGGGTGATGCCACTACAGACGTTGGCATTCATGATTGTACTCTAGGGGACGAAGAAATTGTTGTCGGACTCCCTGAATTCCTATCGGAAAGGCAAAAGTATACAGAGAAGCTGGCTAAAGTTCTTACTGAAATGAGAGTCCCAGAATTTGAGCAACCACCTATCATTGATAAACTATTTACGGCGGTTGAACTGGCTGACAACCCCGACTGGCCTATTATTGCTTGCCACATAATGGACGTCACCTTATTTCATCAAATGATCAGTGATAGGTGCACGGCCTATCAATTAGAGTGTTTTGAGAAAGTGAGAATTGATAGTTTGGAAGATATTGTTAGACAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAGGGTGTAGAGGAAGGGATTGATCGTGGTCAGCTGATGATTATTCGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTGCCCAATGGCTTGCGAATAGTCAGTTCTGTCCCATATGCCGATGCTCAATGTCAGTTGTGGAACAGGCGATGCTGCTTGTTGAACAGGAGATGCCGGTTGTGGAACAGGTGATGTCAGTTGTGGAACAGGCTATTGAAGCATCATGGCGGCATCTGCATTGGCCTATTCTGCTCACAGCATCTGCGGGTGGTATATTAACTGCTATGCTGGTGTGTAGATTATTGAAGCGAAGCCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

272

Amino Acids

31.14

Weight (kDa)

4.86

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	152 - 206	1.9e-09	Ring finger domain
zf-rbx1	PF12678	153 - 206	8.8e-10	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	182 - 205	5.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AatII	GACGTC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	296, 724, 761
AcsI	RAATTY	2 cut(s)	188, 257
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	5 cut(s)	26, 302, 659, 713, 802
AluBI	AGCT	2 cut(s)	223, 526
AluI	AGCT	2 cut(s)	223, 526
Alw21I	GWGCWC	1 cut(s)	389
Alw44I	GTGCAC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	3 cut(s)	323, 390, 737
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	649
ApoI	RAATTY	2 cut(s)	188, 257
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	128, 346, 697
BaeGI	GKGCMC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	636
BceAI	ACGGC	2 cut(s)	309, 405
BciVI	GTATCC	1 cut(s)	49
BclI	TGATCA	3 cut(s)	75, 372, 484
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	51, 126
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	650, 725
BlsI	GCNGC	2 cut(s)	651, 726
BmiI	GGNNCC	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	7 cut(s)	109, 608, 636, 657, 725, 736, 764
BmuI	ACTGGG	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	4 cut(s)	71, 116, 309, 326
Bse3DI	GCAATG	2 cut(s)	22, 573
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	2 cut(s)	22, 573
BseNI	ACTGG	4 cut(s)	71, 116, 309, 326
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	636
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	325, 392, 739
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	3 cut(s)	173, 236, 591
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmFI	GGGAC	3 cut(s)	173, 236, 591
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	325, 392, 739
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	75, 372, 484, 514
BspACI	CCGC	3 cut(s)	296, 724, 761
BspANI	GGCC	3 cut(s)	325, 392, 739
BspFNI	CGCG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	22, 573
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	4 cut(s)	71, 116, 309, 326
BssAI	RCCGGY	1 cut(s)	670
BssMI	GATC	4 cut(s)	75, 372, 484, 514
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	351
Bst1107I	GTATAC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	90, 225, 337, 588
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	4 cut(s)	78, 375, 487, 517
BstMBI	GATC	4 cut(s)	75, 372, 484, 514
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 546, 713, 730, 745
BstSFI	CTRYAG	2 cut(s)	51, 126
BstSLI	GKGCMC	1 cut(s)	389
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	636
BstZ17I	GTATAC	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	325, 392, 739
BtgZI	GCGATG	1 cut(s)	659
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	90, 225, 337, 588
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	3 cut(s)	94, 143, 720
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	4 cut(s)	77, 374, 486, 516
DpnII	GATC	4 cut(s)	75, 372, 484, 514
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	188
FaeI	CATG	3 cut(s)	97, 146, 723
FaiI	YATR	9 cut(s)	95, 144, 213, 344, 611, 613, 721, 770, 782
FaqI	GGGAC	3 cut(s)	173, 236, 591
FatI	CATG	3 cut(s)	93, 142, 719
FauI	CCCGC	1 cut(s)	754
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	3 cut(s)	75, 372, 484
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	650, 725
Fsp4HI	GCNGC	2 cut(s)	650, 725
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	650, 725
HaeIII	GGCC	3 cut(s)	325, 392, 739
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	97, 146, 723
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	47, 180, 249
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	3 cut(s)	128, 346, 697
Hpy166II	GTNNAC	2 cut(s)	213, 387
Hpy188I	TCNGA	3 cut(s)	80, 179, 199
Hpy188III	TCNNGA	2 cut(s)	143, 563
Hpy8I	GTNNAC	2 cut(s)	213, 387
HpyAV	CCTTC	1 cut(s)	500
HpyCH4IV	ACGT	2 cut(s)	132, 351
HpyCH4V	TGCA	4 cut(s)	53, 387, 573, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 546, 713, 730, 745
HpySE526I	ACGT	2 cut(s)	132, 351
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	97, 146, 723
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	75, 372, 484
Kzo9I	GATC	4 cut(s)	75, 372, 484, 514
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	7 cut(s)	109, 608, 636, 657, 725, 736, 764
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	132, 351
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	4 cut(s)	77, 374, 486, 516
MboI	GATC	4 cut(s)	75, 372, 484, 514
MboII	GAAGA	3 cut(s)	176, 449, 578
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	5 cut(s)	168, 188, 257, 398, 423
MlyI	GAGTC	3 cut(s)	41, 174, 258
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	53, 487, 496
MseI	TTAA	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	1 cut(s)	671
Mva1269I	GAATGC	1 cut(s)	138
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	5 cut(s)	69, 546, 713, 730, 745
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	4 cut(s)	75, 372, 484, 514
NlaIII	CATG	3 cut(s)	97, 146, 723
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	142
PctI	GAATGC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	651, 726
PleI	GAGTC	3 cut(s)	41, 174, 257
PpsI	GAGTC	3 cut(s)	41, 174, 257
PspN4I	GGNNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	2 cut(s)	650, 725
Sau3AI	GATC	4 cut(s)	75, 372, 484, 514
SchI	GAGTC	3 cut(s)	41, 174, 258
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	9 cut(s)	110, 135, 225, 274, 354, 359, 386, 528, 687
SfaNI	GCATC	7 cut(s)	109, 608, 636, 657, 725, 736, 764
SfcI	CTRYAG	2 cut(s)	51, 126
Sse9I	AATT	5 cut(s)	168, 188, 257, 398, 423
SsiI	CCGC	3 cut(s)	296, 724, 761
SspMI	CTAG	1 cut(s)	155
TaiI	ACGT	2 cut(s)	135, 354
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	168, 188, 257, 398, 423
TatI	WGTACW	1 cut(s)	149
TauI	GCSGC	1 cut(s)	727
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	649
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	131, 353
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	346
VneI	GTGCAC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	188, 257
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.