Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

9472435 .. 9473385

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAACTGGCTGACAACCCTGAGTGGCCTATTGCTTGCTTTACTCGCCTTATTTCATCAGACGATCAACCTGGCCTATCAGTTAGAGAGTTTCGAGAAAGTGAGAATTGATTGTTTGGAAGATATTGTTAGACAGCAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAAGGTGTAGAAGAAGGGATTGATCGTGGTCAGCTGATGATTATTCGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTTTCCAATGGCTGGCGCAGAGTCAGTTGTGTCCCTTGTGTCGACACTCAATGCCAGTTGTGGAGCAGGCGACGCGGGTTGTTGAACAGGCGATGCCGGTGGTGGAACATGCGATTCTGGTTCTTGAACAGGCGATGCCGGTTGTGGAACAGGCAGCTAAGCCATCGAAACCATCATGGTGGCATCTGCATTGGCCTATGCTGCTCACAGCATCTGCGGGTGGTATATTAACCGCTATGCTGGTATGTAAATTATTGAAGCAAAGGCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

176

Amino Acids

20.07

Weight (kDa)

5.87

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	46 - 100	3.2e-09	Ring finger domain
zf-rbx1	PF12678	47 - 100	9.5e-11	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	76 - 99	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	331, 473, 489
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	176, 341, 383, 514
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	208, 413
AluI	AGCT	2 cut(s)	208, 413
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	3 cut(s)	25, 72, 449
ApeKI	GCWGC	2 cut(s)	410, 457
AspLEI	GCGC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	422, 444
BccI	CCATC	2 cut(s)	427, 436
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	166
BisI	GCNGC	2 cut(s)	411, 458
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	2 cut(s)	412, 459
Bme1390I	CCNGG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	339, 381, 448, 476
Bpu1102I	GCTNAGC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse118I	RCCGGY	2 cut(s)	352, 394
Bse1I	ACTGG	2 cut(s)	11, 311
BseBI	CCWGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	11, 311
BseXI	GCAGC	2 cut(s)	422, 444
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	27, 74, 451
BsiSI	CCGG	2 cut(s)	353, 395
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	27, 74, 451
Bsp143I	GATC	3 cut(s)	63, 166, 196
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	3 cut(s)	331, 473, 489
BspANI	GGCC	3 cut(s)	27, 74, 451
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	331
BsrFI	RCCGGY	2 cut(s)	352, 394
BsrI	ACTGG	2 cut(s)	11, 311
BssAI	RCCGGY	2 cut(s)	352, 394
BssMI	GATC	3 cut(s)	63, 166, 196
Bst2UI	CCWGG	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	36, 270, 324
BstDEI	CTNAG	2 cut(s)	20, 414
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	3 cut(s)	66, 169, 199
BstMBI	GATC	3 cut(s)	63, 166, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 228, 328, 457
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	422, 444
BstXI	CCANNNNNNTGG	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	27, 74, 451
BtgZI	GCGATG	2 cut(s)	362, 404
Cac8I	GCNNGC	3 cut(s)	36, 270, 324
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	2 cut(s)	352, 394
CseI	GACGC	1 cut(s)	337
CviAII	CATG	2 cut(s)	365, 432
CviJI	RGCY	9 cut(s)	10, 27, 74, 162, 208, 268, 413, 418, 451
CviKI_1	RGCY	9 cut(s)	10, 27, 74, 162, 208, 268, 413, 418, 451
DdeI	CTNAG	2 cut(s)	20, 414
DpnI	GATC	3 cut(s)	65, 168, 198
DpnII	GATC	3 cut(s)	63, 166, 196
EcoRII	CCWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	368, 435
FaiI	YATR	6 cut(s)	366, 433, 455, 482, 494, 502
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	364, 431
FauI	CCCGC	2 cut(s)	324, 466
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	411, 458
Fsp4HI	GCNGC	2 cut(s)	411, 458
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	411, 458
HaeIII	GGCC	3 cut(s)	27, 74, 451
HapII	CCGG	2 cut(s)	353, 395
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	368, 435
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	277, 370
HpaII	CCGG	2 cut(s)	353, 395
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	94, 245, 380
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	170, 182
HpyCH4V	TGCA	2 cut(s)	255, 445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 228, 328, 457
HpyF3I	CTNAG	2 cut(s)	20, 414
Hsp92II	CATG	2 cut(s)	368, 435
HspAI	GCGC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	63, 166, 196
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	422, 444
LweI	GCATC	4 cut(s)	339, 381, 448, 476
MalI	GATC	3 cut(s)	65, 168, 198
MboI	GATC	3 cut(s)	63, 166, 196
MboII	GAAGA	3 cut(s)	131, 197, 260
MluCI	AATT	2 cut(s)	105, 506
MlyI	GAGTC	1 cut(s)	286
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	433
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	353, 395
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	4 cut(s)	44, 228, 328, 457
NdeII	GATC	3 cut(s)	63, 166, 196
NlaIII	CATG	2 cut(s)	368, 435
NspI	RCATGY	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	412, 459
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	2 cut(s)	411, 458
Sau3AI	GATC	3 cut(s)	63, 166, 196
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	4 cut(s)	72, 181, 210, 415
SfaNI	GCATC	4 cut(s)	339, 381, 448, 476
SmiMI	CAYNNNNRTG	1 cut(s)	433
Sse9I	AATT	2 cut(s)	105, 506
SsiI	CCGC	3 cut(s)	331, 473, 489
StyD4I	CCNGG	1 cut(s)	69
TaqI	TCGA	3 cut(s)	93, 298, 422
TasI	AATT	2 cut(s)	105, 506
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseI	GCWGC	2 cut(s)	410, 457
TspDTI	ATGAA	2 cut(s)	17, 44
Van91I	CCANNNNNTGG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.