Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

57641883 .. 57644822

Gene Structure 2940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCGTGAGATCCTAATAAGGCATGCCATGATGACCGGATGCTGCCGGAGTTATCCATCTACAGACATTACTGTTCATGATATACTAGTCGTAGCGGAACAAGCTTTTCTTGTCCGAGTCCCTGATTTCCTGCTTTTATCCAAAAGGCAAATGTATACAGAGGAGCTGGCTGAAATTCTTACCAAAATGAGGGTCCCTAGATTTGAGCAACCACCTATCATTGATAAACTATTTATGGCGGTTGAACTAGCTGACAACCCCGAGTTGCCTATTGCTTGCTACATAAAGGATGTCACCGTTATGGAAGAGGCAGCGGAGCCATCGAAACCATCATGGCGGCAGCTGCATTGGCCTATACTGCTCACAACGTCTGCGGGTGGTATATTAACTGATTTGCTGAATAATGCGAAGGGTGGCGTCATTGAGACACTAAAAGAAGATGGCATTGTTGATTTGGACGCCGAGTTTCATTCAGTCCCGAAGTGGATACCTATGAATGCTATGGTTAACTCCTGGCTTGCTGATGCAATCAAGTATGAGCTCTGGGTGGGAACTGATGGCCGGTACATCTGCCCAAAGTATATATTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009536 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_6 GST_N_4

Protein Analysis

197

Amino Acids

22.44

Weight (kDa)

5.02

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	5 cut(s)	95, 239, 314, 337, 374
AclWI	GGATC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	174
AcyI	GRCGYC	2 cut(s)	417, 459
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	104, 166, 251, 343, 541
AluI	AGCT	5 cut(s)	104, 166, 251, 343, 541
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	350, 559
ApeKI	GCWGC	4 cut(s)	42, 311, 340, 343
ApoI	RAATTY	1 cut(s)	174
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	4 cut(s)	29, 323, 330, 352
BccI	CCATC	5 cut(s)	64, 328, 337, 434, 551
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	3 cut(s)	86, 198, 248
BfmI	CTRYAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	5 cut(s)	43, 312, 338, 341, 344
BlsI	GCNGC	5 cut(s)	44, 313, 339, 342, 345
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	3 cut(s)	194, 195, 318
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	29, 514
BsaHI	GRCGYC	2 cut(s)	417, 459
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	514
BseGI	GGATG	2 cut(s)	44, 295
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	4 cut(s)	29, 323, 330, 352
BshFI	GGCC	2 cut(s)	352, 561
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	36, 46, 562
BslFI	GGGAC	3 cut(s)	104, 179, 461
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	3 cut(s)	104, 179, 461
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	352, 561
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	5 cut(s)	95, 239, 314, 337, 374
BspANI	GGCC	2 cut(s)	352, 561
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	194, 195, 318
BspPI	GGATC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	561
BssMI	GATC	1 cut(s)	9
BssNAI	GTATAC	1 cut(s)	156
BssNI	GRCGYC	2 cut(s)	417, 459
Bst1107I	GTATAC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	73, 298
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	2 cut(s)	417, 459
BstC8I	GCNNGC	4 cut(s)	24, 168, 277, 519
BstF5I	GGATG	2 cut(s)	44, 295
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 343, 349, 358
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	29, 323, 330, 352
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BstZ17I	GTATAC	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	352, 561
BtsCI	GGATG	2 cut(s)	44, 295
Cac8I	GCNNGC	4 cut(s)	24, 168, 277, 519
CciI	TCATGA	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	2 cut(s)	406, 467
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	4 cut(s)	23, 28, 77, 333
CviQI	GTAC	1 cut(s)	565
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	4 cut(s)	26, 31, 80, 336
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	3 cut(s)	104, 179, 461
FatI	CATG	4 cut(s)	22, 27, 76, 332
FauI	CCCGC	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	5 cut(s)	43, 312, 338, 341, 344
FokI	GGATG	2 cut(s)	51, 302
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	5 cut(s)	43, 312, 338, 341, 344
FspBI	CTAG	3 cut(s)	86, 198, 248
GluI	GCNGC	5 cut(s)	43, 312, 338, 341, 344
HaeIII	GGCC	2 cut(s)	352, 561
HapII	CCGG	3 cut(s)	36, 46, 562
HgaI	GACGC	2 cut(s)	406, 467
Hin1I	GRCGYC	2 cut(s)	417, 459
Hin1II	CATG	4 cut(s)	26, 31, 80, 336
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	1 cut(s)	117
HpaI	GTTAAC	1 cut(s)	508
HpaII	CCGG	3 cut(s)	36, 46, 562
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	156, 508
Hpy188I	TCNGA	2 cut(s)	116, 593
Hpy188III	TCNNGA	2 cut(s)	77, 478
Hpy8I	GTNNAC	2 cut(s)	156, 508
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	73, 298
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	346, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 343, 349, 358
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	2 cut(s)	417, 459
Hsp92II	CATG	4 cut(s)	26, 31, 80, 336
KflI	GGGWCCC	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	163, 316
LpnPI	CCDG	9 cut(s)	49, 59, 135, 143, 152, 499, 526, 529, 575
Lsp1109I	GCAGC	4 cut(s)	29, 323, 330, 352
LweI	GCATC	2 cut(s)	29, 514
MaeI	CTAG	3 cut(s)	86, 198, 248
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	317, 449
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	154, 183, 301
MseI	TTAA	2 cut(s)	386, 507
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	2 cut(s)	314, 343
MspI	CCGG	3 cut(s)	36, 46, 562
MspR9I	CCNGG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	4 cut(s)	101, 343, 349, 358
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	4 cut(s)	26, 31, 80, 336
NlaIV	GGNNCC	3 cut(s)	194, 195, 318
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PagI	TCATGA	1 cut(s)	76
PctI	GAATGC	1 cut(s)	502
PkrI	GCNGC	5 cut(s)	44, 313, 339, 342, 345
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	194, 195, 318
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PsrI	GAACNNNNNNTAC	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	386, 507
SatI	GCNGC	5 cut(s)	43, 312, 338, 341, 344
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	8 cut(s)	106, 168, 217, 253, 345, 371, 493, 543
SfaNI	GCATC	2 cut(s)	29, 514
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	299
SpeI	ACTAGT	1 cut(s)	85
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	5 cut(s)	95, 239, 314, 337, 374
SspMI	CTAG	3 cut(s)	86, 198, 248
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	512
TaaI	ACNGT	2 cut(s)	73, 298
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	386, 507
Tru9I	TTAA	2 cut(s)	386, 507
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	4 cut(s)	42, 311, 340, 343
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	65, 458, 509
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	3 cut(s)	86, 198, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.