Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454287.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

836 .. 1567

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454287.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgctggtggagctaattggtagcaagtacatcagtgctccattagaggacactcatttgcatcagattagggttacaactgacatatattttgtggtctctcgctcccatttcgtgctaccgtccaaaagggatttgtgtacaaagattctggctgagtatctttccgataaattgagtagtgtcccagaagttgagcagccgactgtcattcatcaaatttttcgggtagttgaactggctgacatccctggggtgcctgttactggcatcttaatcgatgcgactatcctcttatatgacaatgatgagactattgtggagtggattgcaccagattcgttacaaagatttttgcctgggcttatgcctgcaaccaagtcatccattgaaggtttggagaaagtgagacttgagagtttggaagctactgttagactgacgcagtgtgttatttgtaaagagggacttgatcactttgatgatgatgtggaagaaggccttgttacccgcttgccgtgctcgcacctttaccatggagattgcattgtccagtggctcgagacgagcaacttgtgtccattgtgccggtacccaatgccagttatggaagaggaagaggagccatcgaaaccctcaggagcgcgactgagttggcctgtgctgcttacagtgtctgctggtggtataatagctgccgtgctgctttgtagactgttgaagcgaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

243

Amino Acids

27.15

Weight (kDa)

4.88

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	2 cut(s)	256, 591
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	646
AciI	CCGC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	3 cut(s)	29, 142, 593
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	236, 392, 721
AjnI	CCWGG	2 cut(s)	250, 358
AluBI	AGCT	3 cut(s)	13, 428, 695
AluI	AGCT	3 cut(s)	13, 428, 695
Alw21I	GWGCWC	2 cut(s)	40, 524
Alw26I	GTCTC	4 cut(s)	103, 305, 403, 557
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	2 cut(s)	499, 656
ApeKI	GCWGC	4 cut(s)	199, 664, 695, 703
ApoI	RAATTY	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp718I	GGTACC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	637
BanI	GGYRCC	2 cut(s)	256, 591
Bbv12I	GWGCWC	2 cut(s)	40, 524
BbvI	GCAGC	4 cut(s)	211, 651, 682, 690
BccI	CCATC	1 cut(s)	634
BceAI	ACGGC	2 cut(s)	502, 683
BcgI	CGANNNNNNTGC	4 cut(s)	259, 293, 321, 355
BciT130I	CCWGG	2 cut(s)	252, 360
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	4 cut(s)	103, 305, 403, 557
BisI	GCNGC	4 cut(s)	200, 665, 696, 704
BlsI	GCNGC	4 cut(s)	201, 666, 697, 705
Bme1390I	CCNGG	2 cut(s)	252, 360
BmeT110I	CYCGRG	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	258, 593, 624
BmrFI	CCNGG	2 cut(s)	252, 360
BmsI	GCATC	3 cut(s)	70, 271, 279
BpuEI	CTTGAG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	4 cut(s)	250, 251, 359, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	4 cut(s)	243, 271, 553, 602
Bse21I	CCTNAGG	1 cut(s)	637
BseBI	CCWGG	2 cut(s)	252, 360
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	250, 251, 359, 535
BseGI	GGATG	2 cut(s)	246, 383
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	147, 641, 651
BseNI	ACTGG	4 cut(s)	243, 271, 553, 602
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	4 cut(s)	211, 651, 682, 690
Bsh1236I	CGCG	1 cut(s)	646
BshFI	GGCC	2 cut(s)	501, 658
BshNI	GGYRCC	2 cut(s)	256, 591
BshVI	ATCGAT	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	40, 524
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	2 cut(s)	170, 480
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	4 cut(s)	103, 305, 403, 557
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	2 cut(s)	170, 480
BsnI	GGCC	2 cut(s)	501, 658
Bso31I	GGTCTC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	40, 524
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	2 cut(s)	501, 658
BspCNI	CTCAG	3 cut(s)	148, 642, 650
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	258, 593, 624
BspT107I	GGYRCC	2 cut(s)	256, 591
BspTNI	GGTCTC	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	243, 271, 553, 602
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	4 cut(s)	250, 251, 359, 535
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	252, 360
Bst4CI	ACNGT	5 cut(s)	123, 208, 433, 673, 717
Bst6I	CTCTTC	2 cut(s)	606, 612
BstAUI	TGTACA	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	372, 515, 524
BstDEI	CTNAG	3 cut(s)	156, 637, 650
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	246, 383
BstFNI	CGCG	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	4 cut(s)	103, 305, 403, 557
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 519, 523, 664
BstNI	CCWGG	2 cut(s)	252, 360
BstSCI	CCNGG	2 cut(s)	250, 358
BstUI	CGCG	1 cut(s)	646
BstV1I	GCAGC	4 cut(s)	211, 651, 682, 690
Bsu15I	ATCGAT	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	501, 658
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	246, 383
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	4 cut(s)	40, 452, 560, 678
Cac8I	GCNNGC	3 cut(s)	372, 515, 524
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	588
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	28, 141, 592
CviAII	CATG	1 cut(s)	536
CviQI	GTAC	3 cut(s)	28, 141, 592
DdeI	CTNAG	3 cut(s)	156, 637, 650
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	606, 612
EarI	CTCTTC	2 cut(s)	606, 612
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	637
Eco88I	CYCGRG	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	250, 358
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	1 cut(s)	539
FaiI	YATR	8 cut(s)	86, 88, 298, 300, 368, 537, 608, 689
FalI	AAGNNNNNCTT	6 cut(s)	396, 428, 453, 485, 486, 518
FaqI	GGGAC	2 cut(s)	170, 480
FatI	CATG	1 cut(s)	535
FauI	CCCGC	1 cut(s)	518
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	200, 665, 696, 704
FokI	GGATG	2 cut(s)	233, 370
Fsp4HI	GCNGC	4 cut(s)	200, 665, 696, 704
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	4 cut(s)	200, 665, 696, 704
HaeIII	GGCC	2 cut(s)	501, 658
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	1 cut(s)	539
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HinfI	GANTC	2 cut(s)	148, 338
HpaII	CCGG	1 cut(s)	589
Hpy166II	GTNNAC	2 cut(s)	141, 713
Hpy188I	TCNGA	2 cut(s)	66, 169
Hpy188III	TCNNGA	2 cut(s)	562, 639
Hpy8I	GTNNAC	2 cut(s)	141, 713
HpyAV	CCTTC	2 cut(s)	386, 491
HpyCH4III	ACNGT	5 cut(s)	123, 208, 433, 673, 717
HpyCH4V	TGCA	4 cut(s)	61, 332, 374, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 519, 523, 664
HpyF3I	CTNAG	3 cut(s)	156, 637, 650
Hsp92II	CATG	1 cut(s)	539
HspAI	GCGC	1 cut(s)	644
KpnI	GGTACC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	5 cut(s)	10, 43, 110, 622, 641
Lsp1109I	GCAGC	4 cut(s)	211, 651, 682, 690
LweI	GCATC	3 cut(s)	70, 271, 279
MaeIII	GTNAC	4 cut(s)	73, 262, 342, 505
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	3 cut(s)	506, 623, 629
MhlI	GDGCHC	2 cut(s)	40, 524
MluCI	AATT	3 cut(s)	15, 173, 219
MnlI	CCTC	6 cut(s)	40, 302, 457, 607, 613, 646
MseI	TTAA	2 cut(s)	275, 730
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	252, 360
MvaI	CCWGG	2 cut(s)	252, 360
MvnI	CGCG	1 cut(s)	646
MwoI	GCNNNNNNNGC	4 cut(s)	10, 519, 523, 664
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	1 cut(s)	539
NlaIV	GGNNCC	3 cut(s)	258, 593, 624
PaeR7I	CTCGAG	1 cut(s)	560
PasI	CCCWGGG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	148, 338
PkrI	GCNGC	4 cut(s)	201, 666, 697, 705
Psp6I	CCWGG	2 cut(s)	250, 358
PspGI	CCWGG	2 cut(s)	250, 358
PspN4I	GGNNCC	3 cut(s)	258, 593, 624
PstNI	CAGNNNCTG	1 cut(s)	677
RsaI	GTAC	3 cut(s)	29, 142, 593
RsaNI	GTAC	3 cut(s)	28, 141, 592
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	275, 730
SatI	GCNGC	4 cut(s)	200, 665, 696, 704
Sau3AI	GATC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	252, 360
SduI	GDGCHC	2 cut(s)	40, 524
SetI	ASST	5 cut(s)	15, 397, 430, 531, 697
SfaNI	GCATC	3 cut(s)	70, 271, 279
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	413, 560
SmoI	CTYRAG	2 cut(s)	413, 560
Sse9I	AATT	3 cut(s)	15, 173, 219
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	250, 358
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	5 cut(s)	123, 208, 433, 673, 717
TaqI	TCGA	3 cut(s)	279, 561, 629
TasI	AATT	3 cut(s)	15, 173, 219
TatI	WGTACW	2 cut(s)	27, 140
TfiI	GAWTC	2 cut(s)	148, 338
Tru1I	TTAA	2 cut(s)	275, 730
Tru9I	TTAA	2 cut(s)	275, 730
TscAI	CASTG	4 cut(s)	40, 452, 560, 678
TseI	GCWGC	4 cut(s)	199, 664, 695, 703
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	4 cut(s)	40, 452, 560, 678
XapI	RAATTY	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.