Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

9564189 .. 9565010

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCCACCGAGATGTATTTTTGTAGCAATGTGTTTCAAAGAAAAGATGTATCCCTCGACTCTGCAGTCCAAAGCAACTGGCGCGTGATCAGAATAACGCACGCCATGATGACGGGAACCTACTGGGGTGATGCCACTACAGACGTTGGCATTCATGATATATGTACTCTAGGGGACGAAGAAATTGTTGTCGGACTCCCTGAATTCCTATCGGAAAGGCAAAAGTATACAGAGAAGCTGGCTAAAGTTCTTACTGAAATGAGAGTCCCAGAATTTGAGCAACCACCTATCATTGATAAACTATTTATGGCGGTTGAACTGGCTGACAACCCCGACTGGCCTATTGCTTGCCTCATAATGGATATCACCTTATTTCATCAAAAGATCAGCATGGCCTATCAATTAGATTGTTTTGAGAAAGTGAGAATTGATAGTTTGGAAGATATTGTTAGACAGAAACAATGTGTCATTTGTAAGGAGAGCCTTGATCACTTTGAGGGTTTAGATGAAGGGATTGATCGTGGTCAGCTGATGATTATTCGCTTGTCCTGCTCACATCTTTATCACGAAGATTGCATTGCCCAATGGCTTGCGAATAGTCAGTTCTGTCCCATATGCCGATGCTCAATGTCAGTTGTGGAACAGGCGATGCTGCTTGTTGAACAGGAGATGCCGGTTGTGGAACAGGTGATGTCAGTTGTGGAACAGGCTATTGAAGCATCATGGCGGCATCTGCATTGGCCTATTCTGCTCACAGCATCTGCGGGTGGTATATTAACTGCTATGCTGGTGTGTAGATTATTGAAGCGAAGCCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

273

Amino Acids

31.25

Weight (kDa)

4.85

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	154 - 207	9.9e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	154 - 207	2.6e-09	Ring finger domain
zf-C3HC4_2	PF13923	183 - 206	5.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	311, 727, 764
AcsI	RAATTY	2 cut(s)	203, 272
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	5 cut(s)	38, 317, 662, 716, 805
AluBI	AGCT	2 cut(s)	238, 529
AluI	AGCT	2 cut(s)	238, 529
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	3 cut(s)	338, 393, 740
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	2 cut(s)	203, 272
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	140, 358, 700
BbvI	GCAGC	1 cut(s)	639
BciVI	GTATCC	1 cut(s)	61
BclI	TGATCA	2 cut(s)	87, 487
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	63, 138
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	653, 728
BlsI	GCNGC	2 cut(s)	654, 729
BmiI	GGNNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	7 cut(s)	121, 611, 639, 660, 728, 739, 767
BmuI	ACTGGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	4 cut(s)	83, 128, 324, 341
Bse3DI	GCAATG	2 cut(s)	34, 576
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	2 cut(s)	34, 576
BseNI	ACTGG	4 cut(s)	83, 128, 324, 341
BseXI	GCAGC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	340, 395, 742
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	3 cut(s)	188, 251, 594
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	188, 251, 594
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	340, 395, 742
Bsp143I	GATC	4 cut(s)	87, 384, 487, 517
BspACI	CCGC	3 cut(s)	311, 727, 764
BspANI	GGCC	3 cut(s)	340, 395, 742
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	34, 576
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	4 cut(s)	83, 128, 324, 341
BssAI	RCCGGY	1 cut(s)	673
BssMI	GATC	4 cut(s)	87, 384, 487, 517
BssNAI	GTATAC	1 cut(s)	228
Bst1107I	GTATAC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	102, 240, 349, 591
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	90, 387, 490, 520
BstMBI	GATC	4 cut(s)	87, 384, 487, 517
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 549, 716, 733, 748
BstSFI	CTRYAG	2 cut(s)	63, 138
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	639
BstZ17I	GTATAC	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	340, 395, 742
BtgZI	GCGATG	1 cut(s)	662
Cac8I	GCNNGC	4 cut(s)	102, 240, 349, 591
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	4 cut(s)	106, 155, 391, 723
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	4 cut(s)	89, 386, 489, 519
DpnII	GATC	4 cut(s)	87, 384, 487, 517
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	364
FaeI	CATG	4 cut(s)	109, 158, 394, 726
FaqI	GGGAC	3 cut(s)	188, 251, 594
FatI	CATG	4 cut(s)	105, 154, 390, 722
FauI	CCCGC	1 cut(s)	757
FauNDI	CATATG	1 cut(s)	614
FbaI	TGATCA	2 cut(s)	87, 487
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	653, 728
Fsp4HI	GCNGC	2 cut(s)	653, 728
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	653, 728
HaeIII	GGCC	3 cut(s)	340, 395, 742
HapII	CCGG	1 cut(s)	674
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	109, 158, 394, 726
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	59, 195, 264
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	3 cut(s)	140, 358, 700
Hpy166II	GTNNAC	2 cut(s)	6, 228
Hpy188I	TCNGA	3 cut(s)	92, 194, 214
Hpy188III	TCNNGA	2 cut(s)	155, 566
Hpy8I	GTNNAC	2 cut(s)	6, 228
HpyAV	CCTTC	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	65, 576, 736
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 549, 716, 733, 748
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	109, 158, 394, 726
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	87, 487
Kzo9I	GATC	4 cut(s)	87, 384, 487, 517
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	7 cut(s)	121, 611, 639, 660, 728, 739, 767
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	144
MalI	GATC	4 cut(s)	89, 386, 489, 519
MboI	GATC	4 cut(s)	87, 384, 487, 517
MboII	GAAGA	3 cut(s)	191, 452, 581
MluCI	AATT	5 cut(s)	183, 203, 272, 401, 426
MlyI	GAGTC	3 cut(s)	53, 189, 273
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	65, 362, 490
MseI	TTAA	1 cut(s)	776
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	1 cut(s)	674
Mva1269I	GAATGC	1 cut(s)	150
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	81, 549, 716, 733, 748
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	4 cut(s)	87, 384, 487, 517
NlaIII	CATG	4 cut(s)	109, 158, 394, 726
NlaIV	GGNNCC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	654, 729
PleI	GAGTC	3 cut(s)	53, 189, 272
PpsI	GAGTC	3 cut(s)	53, 189, 272
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	2 cut(s)	653, 728
Sau3AI	GATC	4 cut(s)	87, 384, 487, 517
SchI	GAGTC	3 cut(s)	53, 189, 273
SetI	ASST	7 cut(s)	122, 147, 240, 289, 371, 531, 690
SfaNI	GCATC	7 cut(s)	121, 611, 639, 660, 728, 739, 767
SfcI	CTRYAG	2 cut(s)	63, 138
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	183, 203, 272, 401, 426
SsiI	CCGC	3 cut(s)	311, 727, 764
SspMI	CTAG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	57
TasI	AATT	5 cut(s)	183, 203, 272, 401, 426
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	730
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TseI	GCWGC	1 cut(s)	652
TspDTI	ATGAA	3 cut(s)	143, 365, 522
XapI	RAATTY	2 cut(s)	203, 272
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.