RchiOBHm_Chr7g0240901

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001335
Physical Location & Seq
Forward (+)
66866372 .. 66867182
811 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21590

Sequence Viewer

Length: 231 bp
ATGCTTACTAAATTGCCGTGCTCGCACCTTTATCATGGAGATTGCATTGTTCAGCGGTTGGATAAGAATCACATGTGCCCCTTGTGCCGGTGCCAAATGCCGATACCGGAAGAGGCGGATGAGCCATGGGATCCCTTCGGGCGGCAGCTAAGTTGGCCTATGCTGCTCAAAGTGTCTGCCAATACAATTGCTGGGATGCTCCGTTGCTGTAGATTATTGGAGCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

76

Amino Acids

8.8

Weight (kDa)

6.79

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 3 - 30 1.9e-07 Ring finger domain
zf-C3HC4_2 PF13923 5 - 29 4.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 6 - 30 3e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 3 cut(s) 55, 116, 142
AclWI GGATC 2 cut(s) 125, 138
AcsI RAATTY 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 87, 141
AflIII ACRYGT 1 cut(s) 72
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 23
AlwI GGATC 2 cut(s) 125, 138
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 145, 163
ApoI RAATTY 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 80
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 150, 157
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 3 cut(s) 143, 146, 164
BlsI GCNGC 3 cut(s) 144, 147, 165
BmiI GGNNCC 2 cut(s) 92, 132
BmsI GCATC 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 141
Bse118I RCCGGY 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 124, 201
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 87, 141
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 2 cut(s) 150, 157
BseYI CCCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 88, 107
BslI CCNNNNNNNGG 2 cut(s) 87, 141
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 23, 80
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 3 cut(s) 55, 116, 142
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 92, 132
BspPI GGATC 2 cut(s) 125, 138
BspT107I GGYRCC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 124, 201
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 4 cut(s) 22, 84, 154, 163
BstNSI RCATGY 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 150, 157
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 2 cut(s) 124, 201
Cac8I GCNNGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 87
CviAII CATG 3 cut(s) 35, 73, 126
CviJI RGCY 3 cut(s) 124, 148, 157
CviKI_1 RGCY 3 cut(s) 124, 148, 157
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 3 cut(s) 38, 76, 129
FaiI YATR 4 cut(s) 36, 74, 127, 161
FatI CATG 3 cut(s) 34, 72, 125
Fnu4HI GCNGC 3 cut(s) 143, 146, 164
FokI GGATG 2 cut(s) 131, 208
Fsp4HI GCNGC 3 cut(s) 143, 146, 164
GluI GCNGC 3 cut(s) 143, 146, 164
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 88, 107
Hin1II CATG 3 cut(s) 38, 76, 129
HinfI GANTC 1 cut(s) 67
HpaII CCGG 2 cut(s) 88, 107
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 84, 154, 163
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 3 cut(s) 38, 76, 129
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 204, 220
LpnPI CCDG 3 cut(s) 101, 120, 177
Lsp1109I GCAGC 2 cut(s) 150, 157
LweI GCATC 1 cut(s) 186
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 122
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 23, 80
MluCI AATT 3 cut(s) 11, 186, 225
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 106
MseI TTAA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 88, 107
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 22, 84, 154, 163
NcoI CCATGG 1 cut(s) 125
NdeII GATC 1 cut(s) 130
NlaIII CATG 3 cut(s) 38, 76, 129
NlaIV GGNNCC 2 cut(s) 92, 132
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 3 cut(s) 144, 147, 165
PscI ACATGT 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 92, 132
PsuI RGATCY 1 cut(s) 130
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 3 cut(s) 143, 146, 164
Sau3AI GATC 1 cut(s) 130
SduI GDGCHC 2 cut(s) 23, 80
SetI ASST 2 cut(s) 30, 150
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 11, 186, 225
SsiI CCGC 3 cut(s) 55, 116, 142
StyI CCWWGG 1 cut(s) 125
TasI AATT 3 cut(s) 11, 186, 225
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TseI GCWGC 2 cut(s) 145, 163
TspGWI ACGGA 1 cut(s) 191
XapI RAATTY 1 cut(s) 225
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.