Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

4060412 .. 4061361

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAGGTCCCGATAGTTGAGCAGCCGCTTATCATTGATAAAGTATTTACCGAGGTTGAACGAGCTGACAACCCCCAGTGTGCTATTGCTTGCTTGATAAAGGATATCACCTTATTTTGTCAAACTGTCACGATGGCTTATCGGGAGAGCCTTGATCACGTTGAGGATATAGAAGAAGGGATTGATCGCAGTCGGTTGGTTCGCTTGCCGTGTTCCCATCTTTATCACGGTGATTGCCTTTCCAAATGGTTGCCCATGAGTCCGTTGTGTCCTTTGTGCCGATACGCATTGCCGGTTGTGGAACAGACAATGCCGGTTGTGGAACAGACGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAAGCGATGCCGGTTGTGGAACAGATAGCTAAGCCATCGTGGCCACAGTTGCATTGGCCTATGCTCGCAAGGGGCTATCACCTGTTCATTTTTGTTCATGGATTTCTGTTCTTCTCAAAGAAGTTGGCTTGTTCATACATATGGAGGGATTTTATAGTGTTTTATGTAACTGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

217

Amino Acids

24.64

Weight (kDa)

5.0

Isoelectric Point (pI)

68.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	63 - 94	5.4e-10	Ring finger domain
zf-rbx1	PF12678	64 - 94	7.4e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	2 cut(s)	65, 500
AluI	AGCT	2 cut(s)	65, 500
AoxI	GGCC	2 cut(s)	512, 527
ApeKI	GCWGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	100, 242, 542
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	127, 225, 514
BceAI	ACGGC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	511
BisI	GCNGC	2 cut(s)	23, 26
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	2 cut(s)	24, 27
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	8 cut(s)	321, 342, 363, 384, 405, 426, 447, 468
BmuI	ACTGGG	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	514, 529
BsnI	GGCC	2 cut(s)	514, 529
Bsp143I	GATC	2 cut(s)	154, 184
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	514, 529
BspLI	GGNNCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	154, 184
Bst4CI	ACNGT	3 cut(s)	127, 230, 519
BstC8I	GCNNGC	3 cut(s)	91, 206, 537
BstDEI	CTNAG	1 cut(s)	501
BstKTI	GATC	2 cut(s)	157, 187
BstMBI	GATC	2 cut(s)	154, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 520
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	514, 529
BtgZI	GCGATG	7 cut(s)	365, 386, 407, 428, 449, 470, 491
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	91, 206, 537
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	2 cut(s)	256, 569
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	156, 186
DpnII	GATC	2 cut(s)	154, 184
EaeI	YGGCCR	1 cut(s)	512
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	106
FaeI	CATG	2 cut(s)	259, 572
FatI	CATG	2 cut(s)	255, 568
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	23, 26
Fsp4HI	GCNGC	2 cut(s)	23, 26
GluI	GCNGC	2 cut(s)	23, 26
HaeIII	GGCC	2 cut(s)	514, 529
Hin1II	CATG	2 cut(s)	259, 572
HinfI	GANTC	1 cut(s)	259
HphI	GGTGA	3 cut(s)	100, 242, 542
Hpy188III	TCNNGA	3 cut(s)	10, 130, 143
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	3 cut(s)	127, 230, 519
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	523, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 520
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	259, 572
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	154, 184
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	8 cut(s)	321, 342, 363, 384, 405, 426, 447, 468
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	127, 637
MalI	GATC	2 cut(s)	156, 186
MboI	GATC	2 cut(s)	154, 184
MboII	GAAGA	2 cut(s)	185, 574
MlsI	TGGCCA	1 cut(s)	514
MluNI	TGGCCA	1 cut(s)	514
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	46, 157, 609
Mox20I	TGGCCA	1 cut(s)	514
MscI	TGGCCA	1 cut(s)	514
MslI	CAYNNNNRTG	1 cut(s)	610
Msp20I	TGGCCA	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	511, 520
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	2 cut(s)	154, 184
NlaIII	CATG	2 cut(s)	259, 572
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	24, 27
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	610
SatI	GCNGC	2 cut(s)	23, 26
Sau3AI	GATC	2 cut(s)	154, 184
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	268
SetI	ASST	7 cut(s)	9, 57, 67, 113, 162, 502, 555
SfaNI	GCATC	8 cut(s)	321, 342, 363, 384, 405, 426, 447, 468
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	610
SsiI	CCGC	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	127, 230, 519
TaiI	ACGT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	17, 547, 557, 594
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.