Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001123.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Forward (+)

72203 .. 72910

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001123.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgctactacgtacagacgttgccattcatgatatatgtactctaggggacgaagaaattgttgtcggactccctgaattcctatccgaaaggcaaaagtatacagagaagctggctaaagttcttactgaaatgagagtcccagaatttgagcaaccacctatcattgataaactatttacggcggttgaactggctgacaaccccgactggcctattattgcttgccacctaatggacgtcaccttatttcatcaaatgatcagtgataggtgcacggcctatcaattagagtgttttgagaaagtgagaattgatagtttggaagatattgttagacagcaacaatgtgtcatttgtaaggagagccttgatcactttgagggtttagatgaagggattgatcgtggtcagctgatgattattcgcttgtcctgctcacatctttatcacgaagattgcattgcccaatggcttgcgaatagtcagttctgtcccatatgccgatgctcaatgtcagttgtggaacaggcgatgctgcttgttgaacaggagatgccggttgtggaacaggtgatgtcagttgtggaacaggctattgaagcatcatggcggcatctgcattggcctattctgctcacagcatctgcgggtggtatattaactgctatgctggtgtgtagattattgaagcgaagccaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

235

Amino Acids

26.91

Weight (kDa)

4.77

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	3 cut(s)	185, 613, 650
AcsI	RAATTY	2 cut(s)	77, 146
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	2 cut(s)	13, 40
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	191, 548, 602, 691
AluBI	AGCT	2 cut(s)	112, 415
AluI	AGCT	2 cut(s)	112, 415
Alw21I	GWGCWC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	3 cut(s)	212, 279, 626
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	2 cut(s)	77, 146
AsuHPI	GGTGA	2 cut(s)	235, 586
BaeGI	GKGCMC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	525
BceAI	ACGGC	2 cut(s)	198, 294
BclI	TGATCA	2 cut(s)	261, 373
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	539, 614
BlsI	GCNGC	2 cut(s)	540, 615
BmsI	GCATC	6 cut(s)	497, 525, 546, 614, 625, 653
BsaAI	YACGTR	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	198, 215
Bse3DI	GCAATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	198, 215
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	525
BshFI	GGCC	3 cut(s)	214, 281, 628
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	3 cut(s)	62, 125, 480
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	62, 125, 480
BsnI	GGCC	3 cut(s)	214, 281, 628
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	261, 373, 403
BspACI	CCGC	3 cut(s)	185, 613, 650
BspANI	GGCC	3 cut(s)	214, 281, 628
BspHI	TCATGA	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	198, 215
BssAI	RCCGGY	1 cut(s)	559
BssMI	GATC	3 cut(s)	261, 373, 403
BssNAI	GTATAC	1 cut(s)	102
BssNI	GRCGYC	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	114, 226, 477
BstKTI	GATC	3 cut(s)	264, 376, 406
BstMBI	GATC	3 cut(s)	261, 373, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 602, 619, 634
BstSLI	GKGCMC	1 cut(s)	278
BstSNI	TACGTA	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	525
BstZ17I	GTATAC	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	214, 281, 628
BtgZI	GCGATG	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	114, 226, 477
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	12, 39
CviAII	CATG	2 cut(s)	29, 609
CviQI	GTAC	2 cut(s)	12, 39
DpnI	GATC	3 cut(s)	263, 375, 405
DpnII	GATC	3 cut(s)	261, 373, 403
Eco105I	TACGTA	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	77
FaeI	CATG	2 cut(s)	32, 612
FaiI	YATR	9 cut(s)	30, 35, 37, 102, 500, 502, 610, 659, 671
FaqI	GGGAC	3 cut(s)	62, 125, 480
FatI	CATG	2 cut(s)	28, 608
FauI	CCCGC	1 cut(s)	643
FauNDI	CATATG	1 cut(s)	500
FbaI	TGATCA	2 cut(s)	261, 373
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	539, 614
Fsp4HI	GCNGC	2 cut(s)	539, 614
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	2 cut(s)	539, 614
HaeIII	GGCC	3 cut(s)	214, 281, 628
HapII	CCGG	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	32, 612
HinfI	GANTC	2 cut(s)	69, 138
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	235, 586
Hpy166II	GTNNAC	2 cut(s)	102, 276
Hpy188I	TCNGA	2 cut(s)	68, 88
Hpy188III	TCNNGA	2 cut(s)	29, 452
Hpy8I	GTNNAC	2 cut(s)	102, 276
HpyAV	CCTTC	1 cut(s)	389
HpyCH4IV	ACGT	3 cut(s)	10, 18, 240
HpyCH4V	TGCA	3 cut(s)	276, 462, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 602, 619, 634
HpySE526I	ACGT	3 cut(s)	10, 18, 240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	32, 612
Ksp22I	TGATCA	2 cut(s)	261, 373
Kzo9I	GATC	3 cut(s)	261, 373, 403
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	6 cut(s)	497, 525, 546, 614, 625, 653
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	10, 18, 240
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	263, 375, 405
MboI	GATC	3 cut(s)	261, 373, 403
MboII	GAAGA	3 cut(s)	65, 338, 467
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	5 cut(s)	57, 77, 146, 287, 312
MlyI	GAGTC	2 cut(s)	63, 147
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	376
MseI	TTAA	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	435, 602, 619, 634
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	3 cut(s)	261, 373, 403
NlaIII	CATG	2 cut(s)	32, 612
NmuCI	GTSAC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	540, 615
PleI	GAGTC	2 cut(s)	63, 146
PpsI	GAGTC	2 cut(s)	63, 146
Ppu21I	YACGTR	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	13, 40
RsaNI	GTAC	2 cut(s)	12, 39
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	2 cut(s)	539, 614
Sau3AI	GATC	3 cut(s)	261, 373, 403
SchI	GAGTC	2 cut(s)	63, 147
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	6 cut(s)	497, 525, 546, 614, 625, 653
SnaBI	TACGTA	1 cut(s)	11
Sse9I	AATT	5 cut(s)	57, 77, 146, 287, 312
SsiI	CCGC	3 cut(s)	185, 613, 650
SspMI	CTAG	1 cut(s)	44
TaiI	ACGT	3 cut(s)	13, 21, 243
TasI	AATT	5 cut(s)	57, 77, 146, 287, 312
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	1 cut(s)	616
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	17, 242, 408
TspRI	CASTG	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	77, 146
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.