Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010599.1

Orthogroup ID

OG0001335

Physical Location & Seq

Genomic Coordinates Reverse (-)

46585 .. 47815

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010599.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgatgaccggaagctggcgggcttatccatctacagacattactgtgcatgatatactagtcgtagcggaacaattttttcttgtccgagtccctgatttcctgcttttatccaaaaggcaaatgtatacagacgagctggctgaaattcttaccaaaatgagggtccctagatttgagcaaccagctatcattgataaactatttatgggggttgaactagctgacaaccccgacttgcctattgctttgttacataaaggatgtcaccgtatttcatcgtccgcatacccttcaattagattgtttcgagaaaaagaagggattgatcatggtcagcggatgattattcgcttgttctgctcacatctttatcacgaagattgcattttccaatggctggtgacgagtccgttatgccccatgtgccgatactcagtgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaggcaatgccggttgtggaacaagcaatgccagttgtggaacaggcagcggagctatcaaaaccatcatggcggcagctgcattggcctatgctgctcacagcgtctgcgggtggtatattaactgctttgctggtatgtagattattgaagcaaaggcaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

381

Amino Acids

42.51

Weight (kDa)

4.56

Isoelectric Point (pI)

82.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21520 FvH4_5g06850 FvH4_5g06900 FvH4_5g06910 FvH4_5g06931 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g06960 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g07200 FvH4_5g08080 FvH4_5g08080 FvH4_5g08121 FvH4_5g09570 FvH4_5g09630
rosa_chinensis	RchiOBHm_Chr7g0189311 RchiOBHm_Chr7g0190371 RchiOBHm_Chr7g0191221 RchiOBHm_Chr7g0191551 RchiOBHm_Chr7g0191591 RchiOBHm_Chr7g0240901
rosa_multiflora	Rmu_co8454287.1_g000001 Rmu_co8455033.1_g000001 Rmu_co8484079.1_g000001 Rmu_sc0001123.1_g000020 Rmu_sc0001123.1_g000024 Rmu_sc0003634.1_g000006 Rmu_sc0003634.1_g000008 Rmu_sc0004860.1_g000013 Rmu_sc0004956.1_g000007 Rmu_sc0010599.1_g000010 Rmu_sc0029757.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438370 Rroxscaffold_3G00263820
rosa_rugosa	Rorug06G0504200 Rorug06G0504300 Rorug06G0511100 Rorug07G0220400 Rorug07G0339900
rosa_samantha	Rh7AG102100 Rh7AG110000 Rh7AG119200 Rh7AG120500 Rh7DG113000 Rh7DG120200 Rh7DG122300 Rh7DG123700
rosa_wichuraiana	Rw7G010180 Rw7G010260 Rw7G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	7 cut(s)	19, 68, 285, 340, 1028, 1051, 1088
AcsI	RAATTY	1 cut(s)	147
AfiI	CCNNNNNNNGG	3 cut(s)	15, 162, 400
AgsI	TTSAA	3 cut(s)	218, 297, 1129
AhlI	ACTAGT	1 cut(s)	58
AluBI	AGCT	6 cut(s)	15, 139, 188, 224, 1033, 1057
AluI	AGCT	6 cut(s)	15, 139, 188, 224, 1033, 1057
AlwNI	CAGNNNCTG	1 cut(s)	1085
AoxI	GGCC	1 cut(s)	1064
ApeKI	GCWGC	4 cut(s)	1025, 1054, 1057, 1072
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	260, 415
AvaII	GGWCC	1 cut(s)	166
BbvI	GCAGC	4 cut(s)	1037, 1044, 1059, 1066
BccI	CCATC	2 cut(s)	37, 1051
BclI	TGATCA	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	3 cut(s)	59, 171, 221
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	5 cut(s)	1026, 1052, 1055, 1058, 1073
BlsI	GCNGC	5 cut(s)	1027, 1053, 1056, 1059, 1074
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	167, 168
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 162, 400
Bse1I	ACTGG	1 cut(s)	1010
BseGI	GGATG	2 cut(s)	269, 348
BseLI	CCNNNNNNNGG	3 cut(s)	15, 162, 400
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	1010
BseXI	GCAGC	4 cut(s)	1037, 1044, 1059, 1066
BshFI	GGCC	1 cut(s)	1066
BslFI	GGGAC	2 cut(s)	77, 152
BslI	CCNNNNNNNGG	3 cut(s)	15, 162, 400
BsmFI	GGGAC	2 cut(s)	77, 152
BsnI	GGCC	1 cut(s)	1066
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	7 cut(s)	19, 68, 285, 340, 1028, 1051, 1088
BspANI	GGCC	1 cut(s)	1066
BspCNI	CTCAG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	167, 168
BsrI	ACTGG	1 cut(s)	1010
BssMI	GATC	1 cut(s)	328
BssNAI	GTATAC	1 cut(s)	129
Bst1107I	GTATAC	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	46, 272
BstC8I	GCNNGC	3 cut(s)	17, 21, 141
BstDEI	CTNAG	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	269, 348
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	5 cut(s)	360, 426, 1057, 1063, 1072
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	1037, 1044, 1059, 1066
BstZ17I	GTATAC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	1066
BtsCI	GGATG	2 cut(s)	269, 348
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	3 cut(s)	17, 21, 141
CaiI	CAGNNNCTG	1 cut(s)	1085
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	1071
CviAII	CATG	4 cut(s)	50, 332, 424, 1047
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	166
FaeI	CATG	4 cut(s)	53, 335, 427, 1050
FaqI	GGGAC	2 cut(s)	77, 152
FatI	CATG	4 cut(s)	49, 331, 423, 1046
FauI	CCCGC	2 cut(s)	12, 1081
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	5 cut(s)	1026, 1052, 1055, 1058, 1073
FokI	GGATG	2 cut(s)	276, 355
Fsp4HI	GCNGC	5 cut(s)	1026, 1052, 1055, 1058, 1073
FspBI	CTAG	3 cut(s)	59, 171, 221
GluI	GCNGC	5 cut(s)	1026, 1052, 1055, 1058, 1073
HaeIII	GGCC	1 cut(s)	1066
HgaI	GACGC	1 cut(s)	1071
Hin1II	CATG	4 cut(s)	53, 335, 427, 1050
HinfI	GANTC	2 cut(s)	90, 409
HphI	GGTGA	2 cut(s)	260, 415
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	311, 377
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	303, 314
HpyCH4III	ACNGT	2 cut(s)	46, 272
HpyCH4V	TGCA	3 cut(s)	49, 387, 1060
HpyF10VI	GCNNNNNNNGC	5 cut(s)	360, 426, 1057, 1063, 1072
HpyF3I	CTNAG	1 cut(s)	436
Hsp92II	CATG	4 cut(s)	53, 335, 427, 1050
KflI	GGGWCCC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	1030
Lsp1109I	GCAGC	4 cut(s)	1037, 1044, 1059, 1066
MaeI	CTAG	3 cut(s)	59, 171, 221
MaeIII	GTNAC	3 cut(s)	252, 266, 403
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	1 cut(s)	392
MluCI	AATT	3 cut(s)	74, 147, 297
MlyI	GAGTC	2 cut(s)	99, 418
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	1100
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	3 cut(s)	340, 1028, 1057
MwoI	GCNNNNNNNGC	5 cut(s)	360, 426, 1057, 1063, 1072
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	53, 335, 427, 1050
NlaIV	GGNNCC	2 cut(s)	167, 168
NmuCI	GTSAC	2 cut(s)	266, 403
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	5 cut(s)	1027, 1053, 1056, 1059, 1074
PleI	GAGTC	2 cut(s)	98, 417
PpsI	GAGTC	2 cut(s)	98, 417
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	167, 168
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	1057
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	1100
SatI	GCNGC	5 cut(s)	1026, 1052, 1055, 1058, 1073
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	99, 418
SetI	ASST	6 cut(s)	17, 141, 190, 226, 1035, 1059
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	3 cut(s)	74, 147, 297
SsiI	CCGC	7 cut(s)	19, 68, 285, 340, 1028, 1051, 1088
SspMI	CTAG	3 cut(s)	59, 171, 221
TaaI	ACNGT	2 cut(s)	46, 272
TaqI	TCGA	1 cut(s)	310
TasI	AATT	3 cut(s)	74, 147, 297
TauI	GCSGC	1 cut(s)	1054
Tru1I	TTAA	1 cut(s)	1100
Tru9I	TTAA	1 cut(s)	1100
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	2 cut(s)	266, 403
TseI	GCWGC	4 cut(s)	1025, 1054, 1057, 1072
Tsp45I	GTSAC	2 cut(s)	266, 403
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	444
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	3 cut(s)	59, 171, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.