Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000912

Physical Location & Seq

Genomic Coordinates Reverse (-)

20761163 .. 20762431

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGTCTAGAGTCTCACCATTCAGGCCAAGAGTTTGACCTCCAAAGCTTAGAAGCCTCGATCCTCAAGTTCTTTCTTGGACGTCCAATAGTCGAGTGGAGACATGCATTGAAGAATGTTTGGCCGACGTTAGGCTGGTCTTCCGATGACCTTCCTTCTCTTCACTTTTGTAGATCATCTTCATGGCAAAAGCTCCTCTCGTCATCAAGTGGAGGAAGCTTAACGTCGAGTGGAGGAAGTCCAAGGGAAGAGTATCAGCTTCATCCAACAAAGGAGCGAGGATACCACCATCACGTGTATGAAGTTCACCACCCAGTGGAGGAAGCTCAACGTCGAGTGGACGAAGAAGCTCAGCGCCGAGTGGAGAAAGCTCACTATCGAGTGGAGGAAGCTCACCATCAAGTGAAAGATGTCAAAGGCTATATGATCTCCTCCACTAAACAACGACAACAATGCTCTAAGACACCTTACTTTAAGAAGAGGAGAGCAGATGTCCATGATCAAGAATCCAATCTCATTCAAGGAAGTTGGACGCACAAGACCATCAATGTCATTCCTCTAGTCATGATCCTAGACCACAGAGGCATACCTTCACTAATAAGAGGTGGACGACCAAGACCACGAGAAGAGGAGAGCAGATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.93

Weight (kDa)

8.97

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36280 AT1G36280 AT4G18440
fragaria_vesca	FvH4_1g28541 FvH4_5g04980 FvH4_5g04980 FvH4_5g04980 FvH4_5g04980 FvH4_5g04980 FvH4_5g11350 FvH4_5g14130 FvH4_7g08523
malus_domestica	MD04G1043000.v1.1 MD04G1043400.v1.1
prunus_persica	Prupe.1G197600_v2.0.a1 Prupe.7G059800_v2.0.a1
pyrus_communis	pycom04g03780
rosa_chinensis	RchiOBHm_Chr5g0043741 RchiOBHm_Chr5g0043751 RchiOBHm_Chr5g0043781 RchiOBHm_Chr5g0043801 RchiOBHm_Chr7g0186531 RchiOBHm_Chr7g0194071
rosa_laevigata	RLG00000004220 RLG00000004837 RLG00000020409 RLG00000034209 RLG00000034213
rosa_multiflora	Rmu_co8476955.1_g000001 Rmu_sc0000645.1_g000025 Rmu_sc0003468.1_g000006 Rmu_sc0009433.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037270 Rroxscaffold_1G00037280 Rroxscaffold_1G00037310 Rroxscaffold_3G00261570
rosa_rugosa	Rorug06G0474900 Rorug06G0475000 Rorug07G0013500 Rorug07G0013600 Rorug07G0013600 Rorug07G0013600
rosa_samantha	Rh1BG320200 Rh1CG334100 Rh1DG350800 Rh5AG292100 Rh5AG292300 Rh5BG299700 Rh5BG300000 Rh5BG300400 Rh5CG328300 Rh5DG308900 Rh5DG309400 Rh7AG066200 Rh7AG140700 Rh7BG082100 Rh7BG141400 Rh7CG081600 Rh7CG144800 Rh7DG082500 Rh7DG142100
rosa_wichuraiana	Rw7G006850 Rw7G006860 Rw7G007080 Rw7G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	85
AccB7I	CCANNNNNTGG	1 cut(s)	316
AclWI	GGATC	2 cut(s)	55, 562
AcoI	YGGCCR	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	316
AfiI	CCNNNNNNNGG	3 cut(s)	131, 316, 319
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	112, 521
AluBI	AGCT	8 cut(s)	48, 193, 219, 259, 326, 350, 371, 392
AluI	AGCT	8 cut(s)	48, 193, 219, 259, 326, 350, 371, 392
Alw26I	GTCTC	2 cut(s)	18, 94
AlwI	GGATC	2 cut(s)	55, 562
AoxI	GGCC	2 cut(s)	25, 122
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	8, 299, 386
BarI	GAAGNNNNNNTAC	2 cut(s)	163, 195
BauI	CACGAG	1 cut(s)	621
BbrPI	CACGTG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	132
BccI	CCATC	3 cut(s)	297, 405, 551
BcgI	CGANNNNNNTGC	2 cut(s)	435, 469
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	18, 94
BfaI	CTAG	3 cut(s)	8, 560, 572
BfoI	RGCGCY	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 316, 319
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	131, 316, 319
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	4 cut(s)	185, 421, 496, 644
BshFI	GGCC	2 cut(s)	27, 124
BslI	CCNNNNNNNGG	3 cut(s)	131, 316, 319
BsmAI	GTCTC	2 cut(s)	18, 94
BsnI	GGCC	2 cut(s)	27, 124
Bsp143I	GATC	5 cut(s)	60, 173, 426, 499, 567
Bsp1720I	GCTNAGC	1 cut(s)	351
BspANI	GGCC	2 cut(s)	27, 124
BspCNI	CTCAG	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	564
BspPI	GGATC	2 cut(s)	55, 562
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	60, 173, 426, 499, 567
BssNI	GRCGYC	1 cut(s)	82
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	621
Bst6I	CTCTTC	4 cut(s)	165, 243, 473, 621
BstACI	GRCGYC	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	49, 351, 459
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	5 cut(s)	63, 176, 429, 502, 570
BstMAI	GTCTC	2 cut(s)	18, 94
BstMBI	GATC	5 cut(s)	60, 173, 426, 499, 567
BstNSI	RCATGY	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	27, 124
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	321
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	357
CseI	GACGC	1 cut(s)	541
CviAII	CATG	5 cut(s)	104, 183, 497, 565, 645
DdeI	CTNAG	3 cut(s)	49, 351, 459
DpnI	GATC	5 cut(s)	62, 175, 428, 501, 569
DpnII	GATC	5 cut(s)	60, 173, 426, 499, 567
DraIII	CACNNNGTG	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	4 cut(s)	165, 243, 473, 621
EarI	CTCTTC	4 cut(s)	165, 243, 473, 621
Eco130I	CCWWGG	1 cut(s)	242
Eco72I	CACGTG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	5 cut(s)	107, 186, 500, 568, 648
FaiI	YATR	9 cut(s)	105, 184, 300, 423, 425, 498, 566, 587, 646
FatI	CATG	5 cut(s)	103, 182, 496, 564, 644
FbaI	TGATCA	1 cut(s)	499
FokI	GGATG	1 cut(s)	249
FspBI	CTAG	3 cut(s)	8, 560, 572
GlaI	GCGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	27, 124
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	5 cut(s)	107, 186, 500, 568, 648
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	46, 217
HinfI	GANTC	3 cut(s)	4, 11, 506
HphI	GGTGA	3 cut(s)	8, 299, 386
Hpy166II	GTNNAC	3 cut(s)	307, 340, 608
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	8, 503, 565
Hpy8I	GTNNAC	3 cut(s)	307, 340, 608
Hpy99I	CGWCG	3 cut(s)	130, 229, 336
HpyAV	CCTTC	3 cut(s)	161, 165, 600
HpyCH4IV	ACGT	5 cut(s)	82, 128, 224, 294, 331
HpyCH4V	TGCA	1 cut(s)	107
HpyF3I	CTNAG	3 cut(s)	49, 351, 459
HpySE526I	ACGT	5 cut(s)	82, 128, 224, 294, 331
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	5 cut(s)	107, 186, 500, 568, 648
HspAI	GCGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	60, 173, 426, 499, 567
LmnI	GCTCC	2 cut(s)	198, 274
LpnPI	CCDG	3 cut(s)	9, 121, 327
MaeI	CTAG	3 cut(s)	8, 560, 572
MaeII	ACGT	5 cut(s)	82, 128, 224, 294, 331
MalI	GATC	5 cut(s)	62, 175, 428, 501, 569
MboI	GATC	5 cut(s)	60, 173, 426, 499, 567
MboII	GAAGA	8 cut(s)	124, 132, 152, 171, 260, 356, 490, 638
MlyI	GAGTC	2 cut(s)	13, 20
MmeI	TCCRAC	2 cut(s)	290, 509
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	2 cut(s)	221, 474
MslI	CAYNNNNRTG	2 cut(s)	181, 297
NdeII	GATC	5 cut(s)	60, 173, 426, 499, 567
NlaIII	CATG	5 cut(s)	107, 186, 500, 568, 648
NmeAIII	GCCGAG	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	316
PleI	GAGTC	2 cut(s)	12, 19
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
PpsI	GAGTC	2 cut(s)	12, 19
Ppu21I	YACGTR	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	295
RseI	CAYNNNNRTG	2 cut(s)	181, 297
SaqAI	TTAA	2 cut(s)	221, 474
Sau3AI	GATC	5 cut(s)	60, 173, 426, 499, 567
SchI	GAGTC	2 cut(s)	13, 20
SmiMI	CAYNNNNRTG	2 cut(s)	181, 297
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SspMI	CTAG	3 cut(s)	8, 560, 572
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	5 cut(s)	85, 131, 227, 297, 334
TaqI	TCGA	5 cut(s)	59, 93, 227, 334, 379
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	221, 474
Tru9I	TTAA	2 cut(s)	221, 474
TscAI	CASTG	1 cut(s)	321
TspDTI	ATGAA	3 cut(s)	171, 251, 315
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	316
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XspI	CTAG	3 cut(s)	8, 560, 572
ZraI	GACGTC	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.